Entry |
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Name |
(RefSeq) splicing factor 3B subunit 3 isoform X1
|
KO |
K12830 | splicing factor 3B subunit 3 |
|
Organism |
rcn Rosa chinensis (China rose)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:rcn00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112191743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:rcn03021]
112191743
03041 Spliceosome [BR:rcn03041]
112191743
03036 Chromosome and associated proteins [BR:rcn03036]
112191743
Transcription machinery [BR:rcn03021]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112191743
Spliceosome [BR:rcn03041]
Complex A
U2 snRNP components
U2 snRNP specific factors
112191743
Complex B
112191743
Complex C
U2 SnRNP specific factors
112191743
Chromosome and associated proteins [BR:rcn03036]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112191743
TFTC complex
112191743
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
|
Position |
3:24321633..24336072
|
AA seq |
1392 aa
MAVSEEECSSANSRSSSSSTSSTSHYLSKCLLRGTVVLQVLHGHIRFPNSRDIVFGKEKS
IELVIIGEDGIVQSVCEQPVFGTIKDIAVLPWNDGFRTRNRQMPGKDLLVVVSDSGKLSV
LSFCNEMHRFFPVTQVQLSNPGNSRNQLARMLAIDSSGCFIAASAYVDRLAMFSVSMSGG
SDIIDKKIVYPPENEVNVNAARVQKNSISGTIWSMSFISQDPNQSKGHNPILAVVMNRTG
AVRNELLLLGWNIREQDVYVISQYVEDDGPLVLSIAEVPHSYGFAFLFREGDAILMDLRD
ANNPYCIYRTSPNFLSNVVDEANFVQESSKGCDLSSVLQVDDEGGLFNVAACALLELSDL
DPMCIDGDKYNVNVTHKFVCSWSWEPGNVKNQRMIISADTGEYFMIEIFFNPDGVKVQES
ECLYKGLPCKAILWVDGGFLAALVDMGDGMVLKMENGTLNYRSPIQTIVPVLDMSVVDYH
DEKHDQMFACCGVAPEGSLRIIRSGITVEKLLRTAPIYQGITGTWTLRMKVSDTYHSFLV
LSFVEETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVNDGMLVQIHRSAVRLCLPTQGAH
SDGVPLPSPVCTSWFPENLSISLGAVGHNLIVVSSSNPCFIFILGVRMLSVHHYEIYEMQ
HLRLQNELSCISIPQNRYEKKDTSFSNSLVDESSAPALPFGVDISNIFVIGTHKPSVEIL
SLVPSEGLRVLASGAISLTNTFGTAISGCIPQDVRLVLVDRLYVLSGLRNGMLLRFEWPT
SSRRPLSVGPQSPVDWLSVSTDTVLSSVSAANSFGRHMYTTKLSENIKDNFPVDLQLIAT
RRIGITPVFLVPLSDSLDGDVVVLSDRPWLLHTARHSLSYTSISFQSSTHVTPVCYVECP
KGILFVAENCLHLVEMLHSKRLNVQKLHLGGTPRRVFYHSESRLLLVMRTNLSDDTCSSD
ICCVDPLSGSVLSSFKLEFGETGKSMELMRVGSEQVILVGTSLSSGSAIMPCGEAESTKG
RLIVLCLENMQNSDSGSMTFGSKAGSSSQRASPFHEIVGYATEQLSSSSLCSSPDDTSCD
GMKLEETEAWQFRLAFSMPWPGMVLAICPYLDRYFLASAGNAFYLCGFPHDNSQRVKKWA
VARTRFTITSLTAYFTRIVVGDCRDGILFYDYHEESKKLQQLYCDPYQRLVGDCILMDVN
TAVVSDRKGSIAVLSCADYLEDTASPECNLTVSCAYYMGEVAMSIKKGSFSYKLPADDAL
KGSDGSIDFSQNGIIVSTLLGSIITFVPISREEYELLEAVQDRLAVHPLTAPILGNDHNE
FRSRENPVGVPKILDADMLTQFLELTSMQQEDVLSSPLCVQGTVKSRLKLRSSPVPVNQV
VQLLERVHYALN |
NT seq |
4179 nt +upstreamnt +downstreamnt
atggcggtctccgaggaggagtgttcctccgccaactccagatcatcctcctcctccacc
tccagcacctctcactacctctccaagtgcctcctccgtggcaccgtcgttctccaggtc
ctccacggtcacatccgcttccccaactcccgcgacatcgttttcggcaaggagaaatcg
atagagttggtgataatcggtgaagacgggattgtacagtctgtgtgtgagcagcctgtg
tttggcaccattaaagacattgccgtcctaccttggaatgacggattccgaacccgaaac
cgccagatgccgggcaaggatcttttggtcgttgtttcggattccgggaagctctcggtt
ctatctttctgcaatgaaatgcacaggttttttcctgtgacacaagttcaactttctaat
cctggaaactcgaggaatcagcttgcaagaatgctggccattgattcaagtggctgcttc
attgctgctagtgcatatgtagaccgtttggctatgttctctgtttcaatgtctggaggc
agtgacattattgataagaaaatagtgtatccccctgaaaacgaagtcaatgtgaatgct
gctagagtccagaaaaacagtatatcaggtactatatggagcatgagctttatttcacag
gatcctaatcaaagtaagggacataatcctatactcgccgttgttatgaataggactggg
gcagtccgtaatgaattgctgttactgggatggaacattagagaacaagatgtttatgtt
atttctcagtatgtagaagatgatggacccttagtacttagcattgctgaagttcctcat
tcgtatggatttgcttttctgtttagggagggtgatgctattttaatggatcttagagat
gccaacaacccttattgtatctacagaacaagcccaaatttcttatccaatgtggttgat
gaggcaaattttgttcaggagtcgtctaaaggatgtgatctgtctagcgtactacaggtt
gatgacgaagggggtttatttaatgtagctgcctgtgcgttactggaactgagtgattta
gatcctatgtgtatagatggtgacaaatacaatgtgaatgtgactcacaaatttgtgtgt
tcatggagttgggaaccagggaatgttaaaaaccaaagaatgatcatttctgctgatacc
ggagaatatttcatgattgaaatttttttcaaccctgatggcgttaaggttcaagaatct
gagtgtctttacaaaggtttaccatgcaaggcaattttgtgggttgacggcgggtttctg
gctgcactagtagatatgggggatgggatggtcttgaaaatggaaaacggaacacttaat
tacagaagtcctattcaaaccattgtcccagtcttggatatgtcagttgtggattaccat
gatgagaaacatgatcaaatgtttgcttgttgtggagtggcaccggaggggtcactaagg
atcattagaagtggtatcactgtagaaaagctactaaggactgctcctatatatcaaggg
attactggcacttggacattacgaatgaaggtgagtgatacttaccattcatttcttgtg
ctatcatttgttgaggaaaccagggtactctcagttggtttaagctttactgatgtgact
gattcagttggtttccagcctgatgtttctactttggcatgtggtgttgtaaatgatgga
atgctggtccagattcacagaagtgcagtcaggctctgtctgcccacccagggtgcgcat
tctgatggtgttcctttgccttctccagtttgtacctcttggttcccagaaaatttgagc
atcagtttgggtgctgttgggcataatctaattgttgtttcttcatctaatccctgcttt
atattcatacttggggtcagaatgctttcagtgcatcattatgagatatatgagatgcaa
catttgagattgcaaaatgaattatcatgcatctccattcctcagaaccgttacgagaaa
aaagatacaagtttttcaaatagtctggtagatgagagttctgcccctgctcttccattt
ggagttgacatcagtaatatctttgttattggaacacacaagccttcggtggaaatcttg
tctcttgtacctagtgaaggcctacgagttcttgcttctggggcaatttcattaacaaat
acttttggtactgctattagtggctgcattcctcaagatgtaaggcttgtattagttgac
cgattatatgtcctttctggattgaggaatggaatgctgcttcggtttgaatggcctact
tcctctcgaaggcctttatctgtaggacctcagagtcctgttgattggctttcagttagt
accgatactgttttatccagtgtatcagcagcaaattcttttggtcgacatatgtatact
actaagttatctgagaatataaaggacaactttcctgttgatttgcaattgattgctacc
cgtcggattggcatcactcctgtattcctggttcctttaagtgattcccttgatggtgat
gtagttgttctcagtgataggccttggttgctgcatactgcaaggcacagcctctcatat
acttctatctcatttcaatcttcgactcatgtgactcctgtatgttatgtcgaatgcccc
aagggaattttatttgttgcagagaactgtctacatttggtagagatgttgcacagtaag
aggcttaatgtgcagaagttgcatcttggaggcactccgaggagggtcttttatcatagt
gaaagcaggctattgcttgtgatgaggactaatttgagtgatgatacatgttcatctgat
atatgttgcgtagatcctcttagtgggtcggtgctgtcatctttcaaacttgaatttggt
gaaactggaaaatcgatggagttaatgagggttggaagtgaacaggttattttggttgga
acaagtttgtcttctgggtcggccataatgccctgtggtgaggctgaaagtaccaaggga
cgtcttattgttctctgtcttgaaaatatgcaaaattcagacagtggttcaatgacattc
ggctcaaaggcagggtcatcttctcaacgagcttccccatttcatgaaattgttgggtat
gccacagaacagctttcaagtagtagtctctgtagtagcccagatgatactagctgtgat
ggtatgaaacttgaagaaactgaagcgtggcagtttcgattagctttttcaatgccatgg
cctggaatggtacttgcaatctgcccttatcttgatcgttacttcttggcttctgctggt
aatgctttttatttatgtggttttccacatgacaattcccaaagagtaaaaaagtgggct
gtggcgaggacgcgctttacaattacatctttgactgcatatttcactagaattgttgtt
ggtgattgtcgtgatggcatccttttctatgattatcatgaggagtccaaaaagctgcag
caactttactgtgatccgtatcagagattagttggtgattgcattcttatggatgtcaac
actgctgttgtttcagatcgtaagggaagcattgctgtcctttcatgtgcagattattta
gaagatactgcaagtccagaatgtaatttaacagtgagctgtgcttattatatgggtgag
gtagctatgagcatcaagaagggctcattttcatataaacttccagctgatgatgcattg
aaaggcagtgatggaagtattgacttctctcaaaacggtatcattgtgagtacactgcta
ggaagcataataactttcgttccaatatcaagggaagaatatgaactcttagaagctgtc
caagatagactggcggtacatccattaaccgctcctattctcggaaatgatcataatgag
tttcgtagccgtgaaaatccggttggagtacccaagattcttgatgctgacatgctcact
caattcttggagcttacaagtatgcaacaagaggatgtattatcatcacctctttgtgta
caaggcacagtaaagtcacgtttgaaattgcgaagttcacctgttcctgtcaatcaggtt
gtgcaactccttgagcgagttcactatgccctaaactaa |