KEGG   Rosa chinensis (China rose): 112191743
Entry
112191743         CDS       T06020                                 
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
  KO
K12830  splicing factor 3B subunit 3
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112191743
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rcn03021]
    112191743
   03041 Spliceosome [BR:rcn03041]
    112191743
   03036 Chromosome and associated proteins [BR:rcn03036]
    112191743
Transcription machinery [BR:rcn03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     112191743
Spliceosome [BR:rcn03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    112191743
 Complex B
    112191743
 Complex C
   U2 SnRNP specific factors
    112191743
Chromosome and associated proteins [BR:rcn03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     112191743
    TFTC complex
     112191743
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 112191743
NCBI-ProteinID: XP_024186910
LinkDB
Position
3:24321633..24336072
AA seq 1392 aa
MAVSEEECSSANSRSSSSSTSSTSHYLSKCLLRGTVVLQVLHGHIRFPNSRDIVFGKEKS
IELVIIGEDGIVQSVCEQPVFGTIKDIAVLPWNDGFRTRNRQMPGKDLLVVVSDSGKLSV
LSFCNEMHRFFPVTQVQLSNPGNSRNQLARMLAIDSSGCFIAASAYVDRLAMFSVSMSGG
SDIIDKKIVYPPENEVNVNAARVQKNSISGTIWSMSFISQDPNQSKGHNPILAVVMNRTG
AVRNELLLLGWNIREQDVYVISQYVEDDGPLVLSIAEVPHSYGFAFLFREGDAILMDLRD
ANNPYCIYRTSPNFLSNVVDEANFVQESSKGCDLSSVLQVDDEGGLFNVAACALLELSDL
DPMCIDGDKYNVNVTHKFVCSWSWEPGNVKNQRMIISADTGEYFMIEIFFNPDGVKVQES
ECLYKGLPCKAILWVDGGFLAALVDMGDGMVLKMENGTLNYRSPIQTIVPVLDMSVVDYH
DEKHDQMFACCGVAPEGSLRIIRSGITVEKLLRTAPIYQGITGTWTLRMKVSDTYHSFLV
LSFVEETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVNDGMLVQIHRSAVRLCLPTQGAH
SDGVPLPSPVCTSWFPENLSISLGAVGHNLIVVSSSNPCFIFILGVRMLSVHHYEIYEMQ
HLRLQNELSCISIPQNRYEKKDTSFSNSLVDESSAPALPFGVDISNIFVIGTHKPSVEIL
SLVPSEGLRVLASGAISLTNTFGTAISGCIPQDVRLVLVDRLYVLSGLRNGMLLRFEWPT
SSRRPLSVGPQSPVDWLSVSTDTVLSSVSAANSFGRHMYTTKLSENIKDNFPVDLQLIAT
RRIGITPVFLVPLSDSLDGDVVVLSDRPWLLHTARHSLSYTSISFQSSTHVTPVCYVECP
KGILFVAENCLHLVEMLHSKRLNVQKLHLGGTPRRVFYHSESRLLLVMRTNLSDDTCSSD
ICCVDPLSGSVLSSFKLEFGETGKSMELMRVGSEQVILVGTSLSSGSAIMPCGEAESTKG
RLIVLCLENMQNSDSGSMTFGSKAGSSSQRASPFHEIVGYATEQLSSSSLCSSPDDTSCD
GMKLEETEAWQFRLAFSMPWPGMVLAICPYLDRYFLASAGNAFYLCGFPHDNSQRVKKWA
VARTRFTITSLTAYFTRIVVGDCRDGILFYDYHEESKKLQQLYCDPYQRLVGDCILMDVN
TAVVSDRKGSIAVLSCADYLEDTASPECNLTVSCAYYMGEVAMSIKKGSFSYKLPADDAL
KGSDGSIDFSQNGIIVSTLLGSIITFVPISREEYELLEAVQDRLAVHPLTAPILGNDHNE
FRSRENPVGVPKILDADMLTQFLELTSMQQEDVLSSPLCVQGTVKSRLKLRSSPVPVNQV
VQLLERVHYALN
NT seq 4179 nt   +upstreamnt  +downstreamnt
atggcggtctccgaggaggagtgttcctccgccaactccagatcatcctcctcctccacc
tccagcacctctcactacctctccaagtgcctcctccgtggcaccgtcgttctccaggtc
ctccacggtcacatccgcttccccaactcccgcgacatcgttttcggcaaggagaaatcg
atagagttggtgataatcggtgaagacgggattgtacagtctgtgtgtgagcagcctgtg
tttggcaccattaaagacattgccgtcctaccttggaatgacggattccgaacccgaaac
cgccagatgccgggcaaggatcttttggtcgttgtttcggattccgggaagctctcggtt
ctatctttctgcaatgaaatgcacaggttttttcctgtgacacaagttcaactttctaat
cctggaaactcgaggaatcagcttgcaagaatgctggccattgattcaagtggctgcttc
attgctgctagtgcatatgtagaccgtttggctatgttctctgtttcaatgtctggaggc
agtgacattattgataagaaaatagtgtatccccctgaaaacgaagtcaatgtgaatgct
gctagagtccagaaaaacagtatatcaggtactatatggagcatgagctttatttcacag
gatcctaatcaaagtaagggacataatcctatactcgccgttgttatgaataggactggg
gcagtccgtaatgaattgctgttactgggatggaacattagagaacaagatgtttatgtt
atttctcagtatgtagaagatgatggacccttagtacttagcattgctgaagttcctcat
tcgtatggatttgcttttctgtttagggagggtgatgctattttaatggatcttagagat
gccaacaacccttattgtatctacagaacaagcccaaatttcttatccaatgtggttgat
gaggcaaattttgttcaggagtcgtctaaaggatgtgatctgtctagcgtactacaggtt
gatgacgaagggggtttatttaatgtagctgcctgtgcgttactggaactgagtgattta
gatcctatgtgtatagatggtgacaaatacaatgtgaatgtgactcacaaatttgtgtgt
tcatggagttgggaaccagggaatgttaaaaaccaaagaatgatcatttctgctgatacc
ggagaatatttcatgattgaaatttttttcaaccctgatggcgttaaggttcaagaatct
gagtgtctttacaaaggtttaccatgcaaggcaattttgtgggttgacggcgggtttctg
gctgcactagtagatatgggggatgggatggtcttgaaaatggaaaacggaacacttaat
tacagaagtcctattcaaaccattgtcccagtcttggatatgtcagttgtggattaccat
gatgagaaacatgatcaaatgtttgcttgttgtggagtggcaccggaggggtcactaagg
atcattagaagtggtatcactgtagaaaagctactaaggactgctcctatatatcaaggg
attactggcacttggacattacgaatgaaggtgagtgatacttaccattcatttcttgtg
ctatcatttgttgaggaaaccagggtactctcagttggtttaagctttactgatgtgact
gattcagttggtttccagcctgatgtttctactttggcatgtggtgttgtaaatgatgga
atgctggtccagattcacagaagtgcagtcaggctctgtctgcccacccagggtgcgcat
tctgatggtgttcctttgccttctccagtttgtacctcttggttcccagaaaatttgagc
atcagtttgggtgctgttgggcataatctaattgttgtttcttcatctaatccctgcttt
atattcatacttggggtcagaatgctttcagtgcatcattatgagatatatgagatgcaa
catttgagattgcaaaatgaattatcatgcatctccattcctcagaaccgttacgagaaa
aaagatacaagtttttcaaatagtctggtagatgagagttctgcccctgctcttccattt
ggagttgacatcagtaatatctttgttattggaacacacaagccttcggtggaaatcttg
tctcttgtacctagtgaaggcctacgagttcttgcttctggggcaatttcattaacaaat
acttttggtactgctattagtggctgcattcctcaagatgtaaggcttgtattagttgac
cgattatatgtcctttctggattgaggaatggaatgctgcttcggtttgaatggcctact
tcctctcgaaggcctttatctgtaggacctcagagtcctgttgattggctttcagttagt
accgatactgttttatccagtgtatcagcagcaaattcttttggtcgacatatgtatact
actaagttatctgagaatataaaggacaactttcctgttgatttgcaattgattgctacc
cgtcggattggcatcactcctgtattcctggttcctttaagtgattcccttgatggtgat
gtagttgttctcagtgataggccttggttgctgcatactgcaaggcacagcctctcatat
acttctatctcatttcaatcttcgactcatgtgactcctgtatgttatgtcgaatgcccc
aagggaattttatttgttgcagagaactgtctacatttggtagagatgttgcacagtaag
aggcttaatgtgcagaagttgcatcttggaggcactccgaggagggtcttttatcatagt
gaaagcaggctattgcttgtgatgaggactaatttgagtgatgatacatgttcatctgat
atatgttgcgtagatcctcttagtgggtcggtgctgtcatctttcaaacttgaatttggt
gaaactggaaaatcgatggagttaatgagggttggaagtgaacaggttattttggttgga
acaagtttgtcttctgggtcggccataatgccctgtggtgaggctgaaagtaccaaggga
cgtcttattgttctctgtcttgaaaatatgcaaaattcagacagtggttcaatgacattc
ggctcaaaggcagggtcatcttctcaacgagcttccccatttcatgaaattgttgggtat
gccacagaacagctttcaagtagtagtctctgtagtagcccagatgatactagctgtgat
ggtatgaaacttgaagaaactgaagcgtggcagtttcgattagctttttcaatgccatgg
cctggaatggtacttgcaatctgcccttatcttgatcgttacttcttggcttctgctggt
aatgctttttatttatgtggttttccacatgacaattcccaaagagtaaaaaagtgggct
gtggcgaggacgcgctttacaattacatctttgactgcatatttcactagaattgttgtt
ggtgattgtcgtgatggcatccttttctatgattatcatgaggagtccaaaaagctgcag
caactttactgtgatccgtatcagagattagttggtgattgcattcttatggatgtcaac
actgctgttgtttcagatcgtaagggaagcattgctgtcctttcatgtgcagattattta
gaagatactgcaagtccagaatgtaatttaacagtgagctgtgcttattatatgggtgag
gtagctatgagcatcaagaagggctcattttcatataaacttccagctgatgatgcattg
aaaggcagtgatggaagtattgacttctctcaaaacggtatcattgtgagtacactgcta
ggaagcataataactttcgttccaatatcaagggaagaatatgaactcttagaagctgtc
caagatagactggcggtacatccattaaccgctcctattctcggaaatgatcataatgag
tttcgtagccgtgaaaatccggttggagtacccaagattcttgatgctgacatgctcact
caattcttggagcttacaagtatgcaacaagaggatgtattatcatcacctctttgtgta
caaggcacagtaaagtcacgtttgaaattgcgaagttcacctgttcctgtcaatcaggtt
gtgcaactccttgagcgagttcactatgccctaaactaa

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