Rosa chinensis (China rose): 112191795
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Entry
112191795 CDS
T06020
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112191795
Enzymes [BR:
rcn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112191795
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
112191795
NCBI-ProteinID:
XP_024186974
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Position
3:complement(16573362..16577034)
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AA seq
476 aa
AA seq
DB search
MLSGTCIVLISLLASFSLAKAYLNLTLPGQHPNPDEVVQEVHRRVNASIVRRQMLQVTKR
DQFSSCLTGNPIDDCWKCDPDWPSNRQRLADCAIGFGQYALGGKGGEYYIVTDSSDDDAV
NPKPGTLRYAVIQPEPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQY
ISNVIIHNVHIHHCVPSGNTNVRSSPTHYGYRTKSDGDGISIFGSKDIWVDHCSLSHCKD
GLIDAVMGSTGITISNNYFSNHNEVMLLGHSDDYVPDTGMQVTIAFNHFGENLVQRMPRC
RRGYIHVVNNDFTAWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTEEGSWKGW
NWRSEGDIMVNGAFFVASGAGVEIKYEKAYSVEPKSAVLIDQLIMHAGALGVGGRDNNLG
KWNTGPNEGFDSGPDYEDEMSGSSMSMPMQPLSSTSILFTFLISFSCFCILSPNCI
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgctaagcggaacctgcattgtcctcatctctcttctcgcttcattctctcttgctaaa
gcctacctcaacctcactcttccaggccaacatcccaacccagatgaagttgttcaagaa
gttcataggagggtaaatgcttctatagtaagaagacaaatgctgcaagtaaccaagaga
gaccagttctcttcatgcctaacaggaaaccctatcgacgattgctggaaatgcgaccca
gactggcccagcaaccgtcaacgcttagcagactgcgcaatcgggtttggtcagtatgct
cttggaggcaaaggtggggagtactacattgtcaccgactcttctgacgatgatgccgtg
aatccaaagccgggaactctgagatacgctgtgattcagccagaaccgctgtggattgtg
ttcccgagcaacatgctcatcaagctttctcaggagctcatctttaatagctacaagact
cttgatgggcgaggagctaatgttcatattacgggtgggggttgcattactttgcagtat
ataagcaatgtcatcatccacaatgtgcatatccaccattgtgttccctcagggaacact
aatgtgcggtcaagcccaacccactacggctaccgcacgaagtcggacggcgacggcatc
tccatcttcgggtccaaagacatatgggtcgaccactgcagcctatcacactgcaaggac
ggtctgatcgacgccgtgatgggttccacaggcatcacaatctcaaacaactacttctcc
aatcacaacgaagtgatgctactgggccacagcgacgattacgtccccgacaccggcatg
caggtgaccatagccttcaaccacttcggcgagaatctggtgcagcgcatgcccaggtgc
agacgcggctacatccacgtggtgaacaacgacttcactgcatgggagatgtacgcgatc
ggcgggagcgggaaccccacgataaatagccagggcaaccggtacacggcaccgaccaat
aggaacgcgaaggaggtgacgaagcgggtggacacagaggaggggagttggaaggggtgg
aattggaggtcggagggggacataatggtgaatggagccttcttcgtggcgtccggcgcc
ggagtggagatcaagtacgagaaggcatatagtgtggagcccaagtcagcggtgctcatt
gaccaactcatcatgcatgctggtgctctcggagttggtggcagggacaacaatctgggg
aagtggaacacaggacccaacgaaggtttcgattcaggccccgattatgaggatgaaatg
tctggaagcagcatgagcatgccaatgcagccactttcatccacctccattctctttacc
tttttgatttcgttctcatgtttttgtatattatctccgaattgcatttga
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