KEGG   Rosa chinensis (China rose): 112191976
Entry
112191976         CDS       T06020                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112191976
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rcn03021]
    112191976
Enzymes [BR:rcn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     112191976
Transcription machinery [BR:rcn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     112191976
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 112191976
NCBI-ProteinID: XP_040363806
LinkDB
Position
1:11705224..11720909
AA seq 1930 aa
MEEASCSPVLDGELVGIKFGLATHHEICTASMMGCSISHASQLSNPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIDLPLPIYHPNHVSELKRLLGFLCLKCLKMKKNKVPSKSAGLAERL
LSVCCEDASQVSIAEIKPTDGACSLQLKLPSNKKPPPGFWNFLERYGFRYGDGVKRTLLP
REVMQILKRIPEDTRRKLAAKGYNPQDGYILNHIPVPPNCLSVPEISDGVTVMSADPSIS
MLKKVLRQVEMITSSRSGTANFESEIVEANELQAIVDQYLQVRGTGKASRDIDARFGVTK
ELNDSSTKAWLEKMRTLFIRKGSGFSSRTVITGDAYRRVNEVGIPYEIAQRITFEEKVNV
HNIRRLQELVDSKLCLTYSDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPT
THKHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVMELFSVEK
QLLSSHSGKPNLQLATDSLLSLKMMFKKYFFDKAAAQQLAMFVSSSLPQPALLKANSAVP
YWTALQILQTALPAHFECSGDRHLVSASEVLKLDCNTSLIPALINDIGTSIFFEKSAEDV
LNFFNSMQPLLMENLFSEGFSVGLEDFAMSRESIQEIRKGLKIISPLLYHMRTTYNELVE
LQLENHIRTVKQPVSNFITNSSALGDLIDSKSDSAMNKVTQQVGFLGRQLYDQGKLYSKT
LVEDVSSLYQSKYPSDIVDYPSAEFGLVHSGFVHGLDPVEGMIHSIATREVIVRSSRGLS
EPGTLFKNLMATLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSSPQNLFPAGEPVGVLAA
TAMSNPAYKAVLDSTPSSNSSWDLMKEILLCKVSFKNELIDRRVILYLNDCGCGRNYCRE
HAAYLVKNQLKKVSLKDTAVEFMIEYQNQRAAGSMEIDSGLVGHVHLNEMLLRELNLGMY
EILQKCEETINSFRRKKVGKKMNIGDIFKRTVLSYSDCCSFHQSSADNRSGSPCLMFFYQ
DFNNSELEAISQILADFICPVLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGEL
ALDVVLEKSVVKQSGDAWRIALDCCLPVLHVIDTRRSIPYAIKQVQELLGVSCAFDQAVQ
RLATAVAMVAKGVLKEHLILLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTP
KKCFERAAEKCHMDSLSSIVASCSWGKHVAVGTGSRFEILWDTREGGLNEEGGIDVFNFL
HMVNAANGEESTTAALGAEIDDLVPEYENGDVSLSPEHNCTSDKPVFEDIVEFPDSFENV
PGKSSWDSSLNTASSGGKDWGAVKVGRQDSISAETQVDSTSAWGAKANTEDAPSAWGTAK
TATKEDAPSAWGTKTRTEDAWGAKASTEDAPSAWGTAKTATKEDAPSAWGTKTRTEDAPS
AWGTKTSTEDAPSAWGTAKTATSPWETNTGREDSTSGWGTSTAREDATTAWGKSNEKKHV
EDSKAREDATSCWGTENPQSTWRTESENGWSGGGVSKAESTDVQSKKAQEDSTSNGWNAF
SAGPTKPQKENAGSGWCMKGFEKKDGNELEQDKSTACHSWGQQKPAGTSEGAWGQEKPAD
TSQGSWGRQKSPEISKGAWGEQNPADANSHGSWGRQKSPDISEGAWGQQKPDTTSHGSWG
QQKTPEMSQGTWGRQKSPDISQGTWGQQKPSDTSQPATVNQWDSPSAGDGSAGERQQQWG
HNGDANKKRRFEGGRSWGPNAGEWKSKNSRPANADSSVAALYTATRQRLDIFTSEEQHVL
SHIEPIMLSIRRIMHQSGYNDGDRLSDEDQSYILENVFTHHPDKDVKMGSGIDYFTVDRH
GSFQESRCLFVISTDGRKEDFSYRKCLQNMIKGKYPELAEAFNDKYFSKPRRNPMFGQTP
PERTGNEETQ
NT seq 5793 nt   +upstreamnt  +downstreamnt
atggaggaagcgtcttgttcaccggttttagatggggagttggttggaattaaatttggt
ttggcaactcatcatgaaatttgtacagcatcgatgatgggatgctctattagccatgcc
agtcagctttccaacccgtttcttggccttcctctcgagtttgggaagtgtgaatcttgt
ggcacttccgaacctggaaagtgcgaagggcattttggatatatcgacttaccattaccg
atatatcatcctaaccacgtcagtgagctgaagcgcttgctgggttttttgtgcctgaag
tgcttaaaaatgaaaaagaacaaggtcccaagcaagagtgctggtttggccgaaagattg
ttatctgtatgttgtgaggatgcttcacaagtttctatcgcagagattaaacctacagat
ggggcttgctccttgcaattgaaactaccttctaataaaaaaccaccgcctggtttttgg
aatttcctcgaaagatatggttttcgttatggtgatggcgtgaaacgcactttgctgcct
agagaggtgatgcagattctcaaaagaatccctgaagacaccagaagaaaactggctgct
aaaggctataatcctcaagacggatacatcttgaatcatatacctgtccctcctaattgc
ttgtctgtgcctgaaatatctgatggtgttactgttatgtctgcggatccttcaatatca
atgctcaaaaaagttctaaggcaagttgaaatgatcactagttcaaggtctggtacagca
aattttgaatctgaaattgttgaggcgaatgagttacaagcaattgttgatcagtatctt
caagttaggggtactggaaaggcatcccgagatattgatgcaagatttggagtgaccaag
gagctcaatgattcttcaacaaaagcatggcttgaaaagatgaggacattgttcatcaga
aagggttcaggtttctcttcccgcacagtaattactggggatgcatatagaagggtgaat
gaagttggtatcccatatgaaattgctcaaagaataacattcgaggagaaggtcaatgta
cataatattaggcgtctgcaagagctggtagatagcaagttatgcctaacctacagcgat
ggttcatcaacttactctttaagggaaggttcaaaggggcacacatttctgaggcctggt
caagtggtgcataggaggataatggatggggatcttgttttcgtaaataggcctccaact
acccataaacattcgcttcaagcacttcaagtttacgtccatgatgaccatgtggtcaag
attaatcctctaatatgtggaccactaagtgctgactttgatggagactgcattcatttg
ttctatccccagtcacttgcggcaaaggcagaagttatggagcttttttcagtggagaaa
cagctgcttagttctcacagtggcaagcccaatttgcaactggccaccgattcacttttg
tcattaaaaatgatgtttaagaaatattttttcgacaaagcagcagcgcagcaattggcc
atgtttgtttcatcttcattgccacaaccagctttattgaaagctaattctgcagttcca
tattggactgctttgcagatattgcagactgcattgcccgctcattttgagtgctctgga
gacaggcacttggtcagtgctagtgaggtcctcaaacttgattgtaatacaagtcttata
ccagctcttatcaatgacattggtacctctatcttcttcgagaaaagtgctgaagatgtt
ctcaatttctttaattctatgcagccattgctgatggagaatttattttcagaagggttt
agtgtaggtttggaggattttgccatgtctagggagtccatacaggagattcgaaaggga
cttaaaatcatttctcctttgctgtatcatatgaggacaacatataatgagcttgttgag
ttgcaactggagaatcacattcgaacggtgaaacaaccagtttcgaattttataacaaat
tcatcggcattgggtgatttaattgactctaagagtgattcagccatgaacaaagtaact
caacaagttgggttccttggccggcaactttatgaccaggggaaactctactcaaaaaca
ttggttgaggatgtgagctctctgtatcagagcaagtatccatctgacatcgtggattat
ccctctgcagaattcggattagttcatagtggttttgttcacgggttggatcctgttgag
ggaatgattcattccattgctacaagggaagtaattgttcggtcctcaagagggttgtct
gaacctgggactctattcaaaaatctaatggctactctccgagatgttgtcatttgctat
gatggcacagtgaggaatgtgtgcagtaattctataattcagttcgagtatggagtaaag
agcggatctagtccacaaaatttgttccctgccggtgaacctgtgggtgtgttagctgca
acagcaatgtcaaatccagcatacaaggcagttcttgattctaccccaagcagcaactct
tcatgggatctgatgaaggaaatactgctctgcaaagtcagtttcaagaacgagctcatt
gatcgtcgtgtaatcttgtatctgaatgactgtggttgcggaagaaactactgcagagaa
catgcggcatatttggtcaagaatcagttgaaaaaagtcagccttaaagatactgcagta
gagtttatgattgaatatcaaaatcagcgagctgcgggaagcatggaaattgactctggc
cttgtaggtcatgttcatttgaatgagatgctgttacgggagttaaatctgggaatgtat
gagatccttcaaaaatgcgaagaaactatcaattcatttcggagaaagaaggttgggaag
aagatgaacatcggtgacatttttaaaaggacagttttatcgtacagtgactgttgttct
tttcatcaatcctctgctgacaatagatctggatctccttgcttgatgttcttctaccaa
gattttaataattcagagttggaggccatttcacaaatcttggctgactttatttgccca
gttcttctaaaaacagtaattaaaggtgatcctcgaatttcgtcggcgaacataatttgg
atcaactcagaatcaacaacttggataagaagcccaaataaatctctgaagggtgaattg
gctttggatgttgttctggagaagtcggttgttaaacaaagtggtgatgcatggagaata
gcccttgattgttgccttccagtgcttcatgtgattgacaccaggcgttccattccatat
gccatcaaacaagtgcaggaattgttgggggtttcttgtgcttttgatcaagcagttcag
cgcctcgcgacagctgttgcaatggtggctaaaggtgttctcaaagagcatcttattctc
ttggcaaacagtatgacatgcgctggaaatttcgttggtttcaatcctggtggttataaa
gcactatctcgcgcattgaatatacaagtaccctttacagaagcaacattgtttacacca
aaaaagtgttttgagagagcagctgaaaagtgtcatatggattctttgtcgagcatagtt
gcatcatgttcctggggtaaacatgtagctgttggtactggctccagattcgaaatcctc
tgggacacaagagagggaggtttgaacgaagagggtgggatagatgttttcaactttcta
catatggtgaatgctgcaaatggagaagaatcaactactgcagctttgggagcagaaatt
gatgatcttgtgccggaatatgaaaatggagatgtgtccttgtcaccagaacataactgt
acttctgataagccagtgtttgaagatattgttgaattcccggatagtttcgaaaatgtt
cctggaaaatcaagctgggattcatctctcaacaccgcttcttctggtgggaaagactgg
ggggcagttaaagttggaagacaagatagcatttcagcagaaacccaagtggatagcaca
tctgcatggggggccaaggctaatacagaagatgccccatctgcatggggaacagccaag
actgctactaaagaagatgccccatctgcatgggggaccaagactcgtacagaagatgca
tggggggccaaggctagtacagaagatgccccatctgcatggggaacagccaagactgct
actaaagaagatgccccatctgcatgggggaccaagactcgtacagaagatgccccatct
gcatgggggaccaagactagtacagaagatgccccatctgcatggggaacagccaagact
gctacatctccatgggagaccaacactggtagagaagattccacatcgggctgggggaca
agtactgccagagaagatgccacgacggcatgggggaaaagcaatgaaaagaaacatgtt
gaggattccaaggctagagaagatgccacatcttgctgggggacagaaaatccacaatct
acatggaggacagaaagcgagaatggttggtctggtggtggggtgagtaaagctgaatca
acagatgtccagtccaagaaagcacaagaagattctacatccaatggttggaatgccttt
tctgctgggccaacaaaaccccaaaaggagaatgctgggtctggatggtgcatgaaaggt
tttgagaagaaagatggtaatgagttggaacaagataagtctactgcctgtcattcttgg
gggcagcaaaagcccgctggtacttcagaaggtgcttggggtcaggaaaagcctgccgat
acttctcagggcagttggggacggcaaaagtctcctgagatatctaaaggcgcttggggg
gagcaaaaccctgctgatgctaattctcatggcagttggggacggcaaaagtctcctgat
atttctgaaggcgcatgggggcagcaaaagcctgatacaacttctcacggctcttgggga
cagcaaaagactcctgaaatgtctcagggcacttggggaaggcaaaagtctcctgatatt
tctcaaggcacatgggggcaacagaagccttctgatacttctcaacctgcaactgtgaat
caatgggattctccaagtgcaggagatggaagtgccggtgaaagacagcaacaatggggt
cataatggagatgcgaacaagaaaagacgttttgaaggtggcaggagttggggtccaaat
gctggggagtggaagagtaagaacagtcgccctgctaatgctgattctagtgtggctgca
ctatataccgcaacgagacaaagattggatattttcacttctgaggagcaacatgttctt
tcccatattgagccgattatgctgtctattcgaagaataatgcatcaatctggctacaac
gatggagatcggttgtcagatgaggatcaatcatacatacttgaaaatgtgttcacacac
cacccagataaagatgttaagatgggttctggaattgactattttacagttgataggcat
ggaagttttcaagaaagccgatgccttttcgtcatatcaactgatggtcgcaaggaggac
ttttcctacagaaaatgcctgcaaaatatgataaagggaaagtatcctgagctagctgaa
gcattcaatgacaagtacttcagcaaacctcggcggaatcccatgttcggtcagacccct
ccagagagaactgggaatgaggagacacagtag

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