KEGG   Rosa chinensis (China rose): 112192025
Entry
112192025         CDS       T06020                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112192025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rcn03041]
    112192025
Spliceosome [BR:rcn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    112192025
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 PRP4 WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SCAP eIF2A WD_LRWD1 WD40_like Beta-prop_IFT140_1st Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Beta-prop_SPT8
Other DBs
NCBI-GeneID: 112192025
NCBI-ProteinID: XP_024187305
LinkDB
Position
3:30712868..30716949
AA seq 523 aa
MTMEEEEEKLLSSIAASEPPQNGEAAASTTDSDSGSGDDAAAAAQGASSAGVEYHISEEQ
KAARERQERAMQQLLMKRRASALAVPTNDNAVRTRLRRLGEPMTLFGEREMERRDRLRSI
LAKLDSAQLETLMKAHDEDEASAAGAQGGDDSDFDQEIQYPFFTEATRPRALRDARVHIA
QYSLSRAALRLQRARRKEEDPDEDMDAEINWALEQASNLKLDCSEIGDDRPLSGCSFSQD
GKLLAACALSPVAKLWSMPQVTKVATLKGHTERLTDVAFSPVQNHLLATASADRTARLWN
SEGAHLMTFGGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRSVYA
IDFHPDGSLVATAGLDALARVWDLRSGRSILTLEGHVKKVLALSFSPNGYYLATGGEDNT
CRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGYFLVTGSYDMTAKIWSARDFKPVKTLSG
HESKVTSLDVSGDGHHIATVSHDRTIKLWSSGTNEKDQEMNVD
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgacgatggaggaggaggaggagaagcttctctcctctatagcagcttccgagcccccc
caaaacggcgaagcagcagccagtacgaccgactccgactccggttccggtgacgatgcc
gccgccgccgctcaaggagcctcctccgccggagtcgaataccatatatccgaagagcaa
aaagcggcgcgagagcgacaggagagagcaatgcagcagctcttgatgaagcgccgcgct
tccgccctcgccgtccccaccaacgacaacgccgtcaggactcgtctccggcgcctcggc
gagcccatgactctgttcggagagcgagagatggaaaggcgggaccggctcaggtcgatt
ctggccaagctcgattcggcgcagctggagacgctgatgaaggctcacgacgaggacgag
gcttctgctgctggtgctcaaggtggagacgattctgacttcgatcaagaaattcagtac
cccttcttcactgaagcgaccaggcccagagctttgcgtgacgctagggttcatattgcg
cagtactcgctttcccgggcggcgttgcggcttcaacgcgcgaggaggaaggaggaggat
ccggatgaggatatggatgccgaaatcaactgggctttagagcaggcctccaatttgaag
cttgattgcagtgagattggggatgataggccactttctggttgctcattctcacaagat
ggcaaattgcttgccgcctgcgctttaagtccagttgccaagctgtggagcatgcctcaa
gtaacaaaggttgccaccttgaagggacatacagagcgcttaactgatgttgcattttct
cctgtgcaaaatcatctcttggcaactgcgtctgcggataggactgcgaggttgtggaac
agcgaaggagcgcacctaatgacattcgggggacatttggaccgtcttgcccgcattgcc
ttccatccctcaggaaagtacttgggtacaactagctttgacaagacttggaggctgtgg
gatgtagagactggtgaagagttgcttcttcaagaaggtcacagtaggagtgtctatgct
atagacttccacccagatggctcattggttgcaactgctggattggatgcgcttgctcgt
gtttgggacctccgtagtggtagaagtattcttaccttggaaggccatgtcaaaaaagtt
cttgcactcagtttttcaccaaatggttattatctagccactgggggtgaagacaacact
tgtaggatatgggatttaaggaaaaagaaatccatatacattattccagcacactccaat
ctcatatcacaggtcaaatttgaacctcaagagggatatttcttggtaactggctcctat
gatatgacagcaaagatatggtcagcccgagattttaagcctgtcaagacgctctctgga
cacgaatcaaaagttacttccttggatgtttcaggagatggacatcacattgctactgta
tcacatgaccgaactatcaaactatggtcgagcggtaccaatgagaaggaccaggaaatg
aatgttgattag

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