Rosa chinensis (China rose): 112192134
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Entry
112192134 CDS
T06020
Name
(RefSeq) uncharacterized protein LOC112192134
KO
K06100
symplekin
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112192134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112192134
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112192134
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112192134
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112192134
U7-dependent histone pre-mRNA processing factors
112192134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
112192134
NCBI-ProteinID:
XP_024187491
LinkDB
All DBs
Position
3:complement(10575834..10585196)
Genome browser
AA seq
1333 aa
AA seq
DB search
MVGMMMMTTANSNERLARLLDSAVVAADIPSKLDRLTQLKRDLLRRDPAFISELLPRLFE
LQSDRFSPVRKFATEMLGEIGLMHVDFVPEIVPSLINVLSDDTPAVARQAITSGSELFRC
VLEKVALQGLHSSELDSLLESSWSWMLKLKEEIFSIAFQPGSGGVRLLALKFVQEVILLY
TPDPNGSQEPPAHEGQLVEFNISWLRGGHPLLNVGNLSIEASQSVGLLLDQLRLPTVKSL
GNLVIVVLINSLSAIAKNRPAFYGRILPVLLGFDPSTAVINGIRVSGARYALKNAFISCL
KCTHQGAAPWRDRLVGALTKMKDGGLVEQAIYPVVNINGNVEGQNNSPVIKEEEPTVRTS
TAVQSNFGRKRLGAPDSSELAEDEDASGKRIKSTPSVSEESAKDLDRNISVSQDDISSSG
TATSRGSGDSGPVQQLLDMFGALVAQGEKAVGSLEVLISSFSADMLAEVVMANMCNLPPN
LPGAEGDDVSLINMGIVGGDSQVRYPQSFIADVLSLTSTFPPIAALLDAHQSASYNIVKS
EPKEEQVTVVGDSAVACTDMDYEAETAMLPTGLPASPNVFSPETENGCPSLPSDVDDIDG
LDNEIPGLDSSACNSGLSEPVVASSSTFMDVEDASLEQVSSLSQQPLLNILPSLSADRSE
ELSLGAAVADVNSLISSTATSVGLTHHLVLPKMSAPVVILSDEENDRLQRLAFTRIIEAY
KQIDVSGGSQVRISLLIHLGVEFPLDLDPWKLLQEHILADYTNHEGHELTLRVLYRLFGE
AEVEHDFFSSTNATSVYEKFLLTVIETLRDSLPPSDKSLSRLLGEVPSLPNSVLKLLECM
CSPENCDKTEKEVQGGDRVTQGLSTVWSLILLRPPFRDGCLKIALQSAVHHLEEVRMKAI
RLVANKLYPLSAIAKRIEDFAIEMLLTVKTDDATERTDADGSKAESQKDSDSEKHSNEPP
AVSGNQDISSDTHQSCNSQSMSPLSIAEAERCLSLYFALCTKKHSLFRQIFAVYGNASKA
VKQAVNHHIPKLVRTMGSSRDLLDIISDPPAGSENLLMQVLHTLTDGAVPSQELIFTIRK
LYDSKLKDIEILIPILPFIPKDEVMLIFPQLVNLPPDKFQAALTRTLQGSSHSGPLLAPA
EVLIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFNQQVLAKVLNQLVEQIPLPLLFMRT
VLQAIGAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFGVLLQLPPAQL
ENALKRTAALKAPLVAHASQPDIRSSLPRSILVVLGIVSDSQAQTSQANTGDASNSDKEA
VTEKSKEESSSAC
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcatgatgatgatgaccaccgccaattccaacgaacgcctcgcccgcctcttg
gactccgccgtcgtcgccgccgacataccgtccaagctcgaccggctaacccaattgaag
cgagatttgctccggcgagaccccgctttcatctccgagctccttcctcgcctcttcgag
cttcagtccgaccggttcagtcccgttcggaaatttgccaccgaaatgctcggcgaaatt
ggattgatgcacgtagatttcgtgcctgagattgtgccgtcgttgattaatgtgttaagt
gatgatacaccggctgtggctcgccaagccattactagtgggagtgagttgtttcgctgc
gttctagagaaggttgcacttcagggtctacattctagcgagttggacagtttgcttgag
tcatcgtggtcatggatgttgaagttgaaggaggaaatattctcgatagcttttcagcct
ggaagcggtggagtgaggttgctggcattgaaatttgtccaggaagttattcttctttat
actcctgatcctaatggctcccaagagcctccagctcatgaaggacaattggtggaattt
aatatatcttggcttcgtggcggtcatcccctactcaatgttggaaatttgtcaattgag
gctagtcaaagtgtgggcttattgcttgatcaactaaggctcccaactgttaagtctctt
ggtaacttagtcatcgttgtgcttattaatagtctttcagcaattgcaaagaatagacct
gccttctatggtcgcattttgcctgtattgcttgggtttgatccctcaactgctgtcatt
aatgggatacgtgtctcaggagcacgctatgccttaaaaaatgccttcatctcctgctta
aaatgtactcaccagggtgctgcaccgtggcgagatcgtttagttggggcgttgaccaag
atgaaagatggagggttggtagagcaggccatttatccagttgtcaatattaatggaaat
gtggagggtcaaaacaattctccagttattaaggaagaggagcccacagttagaacatct
actgctgtgcaaagtaattttgggaggaaacgattgggagcaccggatagtagtgaactt
gctgaggatgaagacgcctctggaaagcgtatcaaatcaacacctagtgtctcagaagaa
tcggccaaagatttagataggaatatttctgtgtctcaagatgacatttcttcaagtgga
acagccacttccagaggaagtggtgatagtggacctgtgcagcaacttcttgatatgttt
ggcgcattggttgctcagggtgaaaaagcggttggttctttagaggttcttatctcaagt
ttctctgctgacatgctagctgaggtagtgatggctaacatgtgcaaccttcctcccaat
cttcctggagctgaaggagatgatgtatctttgataaacatgggtatagttggcggtgat
tcacaagtcagatatccccaatcatttattgccgatgtactctctcttacaagtactttc
cctccaatagctgcacttctagatgctcatcagtcggcgtcttataatatagtgaaatct
gagccaaaggaagagcaggtaacagttgtaggtgatagtgctgttgcatgtactgatatg
gattatgaagctgaaactgctatgttgcctactggtttaccagcttcacctaatgtgttt
tcacctgagaccgagaatggttgtccgtctcttccgtctgatgttgatgacatagacggt
cttgacaatgaaatacctgggcttgattcttctgcttgtaatagtggactatcagaacct
gttgttgcatcctcatcgaccttcatggatgtcgaagatgccagtctagagcaagttagc
agtttgagtcagcagccactgcttaatatacttccatcattgtcggccgataggtctgag
gagcttagccttggagcagctgtggcagatgtcaacagtctgatatcttcaacagcaaca
tcagttgggttgacccatcatcttgtcctgcctaagatgtcggccccggttgtcatcctt
tctgatgaagagaacgatcgtttacagaggttggcttttacccgcataatcgaggcatat
aagcagattgatgtttctgggggttcccaagttcgaatctctctccttatacatttagga
gtcgagttccccttggacttagacccctggaaactgctgcaggagcatatcttggcagat
tatacaaatcacgagggacacgagttgacgttgcgtgtcctatacaggttatttggagag
gcagaagtggaacacgatttcttttcttctacaaacgctacttctgtttacgaaaagttc
cttttaactgtgatagaaacacttagagattctttaccaccgtcagataaatcattaagt
agattgcttggtgaggttccatctttaccaaattcagttttgaagttattggagtgcatg
tgttcgcctgaaaattgcgacaaaactgagaaggaagtacaaggtggggatcgagtgact
caaggtctcagtactgtatggagcctgattttgctgaggcctccttttcgagatggctgc
ttaaaaattgctctacagagtgcagttcatcatctggaggaagtgcgtatgaaggctata
cgtctggttgcaaacaagctttatccgttgtcagccattgccaagcgaattgaagatttt
gcaattgaaatgttgcttactgtgaaaactgatgatgcaactgaaagaacagatgctgat
ggatcaaaagctgaatcccaaaaggattctgactcagaaaaacattcgaatgaacctcca
gcagtgagtggcaaccaagatatctcctctgacactcatcaatcatgcaattctcaaagt
atgtcaccgctttcaattgccgaggcagagcggtgtttgtcattgtattttgctctgtgc
acaaagaagcactctctttttcgccaaatattcgctgtgtatggaaatgcatcaaaggcg
gttaagcaggcagttaatcatcatattccaaaactagtgcgtacaatgggctcgtcacga
gatcttcttgatattatttcagaccctccggctggaagcgagaacctcctgatgcaggtt
ttgcatacactgacagatggggcagttccctctcaagagctgatatttaccattaggaag
ttatatgattcaaaactgaaggacatagagattctcattccgatattaccatttatacca
aaagatgaggttatgttaatctttccccaacttgtgaatcttcccccggataagttccaa
gcagcactaactcgcacactacagggatcatcccattctggtcctcttctcgctccagct
gaagtattgattgctatccatgggattgatcccgacagagatggaattccattaaagaag
gtcacagatgcatgcaatgcatgttttgagcagcgacagatattcaaccaacaagttctt
gctaaagttctgaatcaattggttgagcagattccccttcctttactgttcatgcgtaca
gtattgcaagctattggtgcttttcctgcactggtggattttataatggagatcctctct
cgacttgtgagcaaacagatatggaaatacccaaagttgtgggtgggattcctgaagtgc
gcattgttgacaaagcctcagtcatttggcgtgttgcttcagctacccccagcacagcta
gaaaatgcattgaagagaactgcagctctgaaagcacccttggttgcccatgctagccaa
ccagatatccgatcttcacttccaaggtctatattggtagttttgggaattgtttcagac
tctcaggcacaaacgagtcaggcaaataccggagatgcaagcaactcagacaaggaggca
gtcacggagaaatcgaaagaagaatcatctagtgcttgttga
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