Rosa chinensis (China rose): 112192346
Help
Entry
112192346 CDS
T06020
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112192346
Enzymes [BR:
rcn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112192346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112192346
NCBI-ProteinID:
XP_024187796
LinkDB
All DBs
Position
3:complement(13940448..13943281)
Genome browser
AA seq
375 aa
AA seq
DB search
MGNSHGHRKHRNGANRPVTPNPPFKYGPSDPQAHIPSSAKPIMAVSLPYSHVDSTLRALA
AQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREACRKKEPLWIVFDISGTIHLSSYLNV
SSHKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRC
SLRDYEDGLIDITRCSTDITISRCHFSQHDKTMLIGADPSHVDDRCIRVTIHHCFFDGTR
QRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKIAFKYLTEKAVDR
EAATTGFIRSEGDLFITGTQAGLATEGGENCMFHPSQHYQTWTVGPPVDDLKHVLQHCTG
WQSIPRPADQASVAQ
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgggcaactcccacggccaccgcaaacaccgtaacggcgcaaaccgccccgtaacgccc
aatccaccctttaaatatggcccgtccgatccgcaagcacatatccccagctcagctaaa
cccatcatggcggtgtccttgccttactctcatgttgactccacccttcgcgccctcgct
gcccaagctgaaggctttggccgcttagcaatcggcggcctccatggtcctctttaccac
gttactactctagccgatgatggtccagggtcacttagggaagcctgtcgaaagaaagag
ccactttggattgtctttgatatttcgggcactatccatctctcgtcttacttgaatgtg
tcgtcacataagacaattgatggccggggtcagaggattaagtttactgggaaggggttg
aggctgaaggaatgtgagcatgtgattatatgcaatctagagtttgaaggtggtagagga
ccagatgttgatggtattcagataaaaccaaactctaagcacatatggatagaccggtgc
agccttcgtgattatgaagacggacttatagatatcaccagatgcagcacggatattaca
atttcgaggtgtcatttctcgcagcatgataagacaatgctaatcggagcagacccctct
catgtagatgacagatgcatccgggttacaattcaccactgtttctttgatgggacccga
cagcggcatcctcgtgttagattcgccaaagtacatctatacaacaattacacccgaaac
tggggcatatatgctgtttgtgccagtgtagaatcacagatatactctcaatgcaatata
tatgaagcaggacagaagaaaatagcgtttaaataccttacagagaaggcagtggacagg
gaggcggcaacgactggcttcattaggtcggaaggggacttattcataactggaactcaa
gcaggattagccaccgagggtggtgaaaattgcatgtttcatcctagccaacactaccag
acatggacagtaggacctccagtggatgatctgaaacatgttctccaacattgcaccgga
tggcagtccattccccggccagctgatcaggcaagtgtagcacagtaa
DBGET
integrated database retrieval system
