Rosa chinensis (China rose): 112192383
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Entry
112192383 CDS
T06020
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112192383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112192383
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112192383
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112192383
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112192383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
112192383
NCBI-ProteinID:
XP_024187865
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Position
3:complement(24509183..24515099)
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AA seq
603 aa
AA seq
DB search
MLSVIRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPETAPIDGQFLRYKWYRIQNDK
KVAVCSVHPSEQATLQCLGCVKAKLPVSKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEEVFGRFNSSGSGVLNTSLSGSVSSTSLTNGSTPLYPAAVTQRSGGETWFEVGRSKT
YTPTADDIGHVLKFECAVVDVETKVPVGPPNAILTSRVIPAPSPSPRRLVPVNGVDVMGN
IDSDGRISSSGTFTVLSYNILSDVYATSESYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQSDHFDEFFAPELDKHGYQALYKRKTNEVYSGNTQTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTDAMIPTNQKKSALNRLVKDNVALIVVLEAKFSNQGVDNPGKRQLLCVA
NTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHTLLAMGKVD
PSHIDLQVDPLNILRPLSKLIHQLPLVSAYSSFARLGVGLGLEQQRRRMDPTTNEPLFTN
CTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPR
IRR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcgtgatacgcgtgcaccttccttctgatattcccattgtaggctgtgagctc
acgccttatgtgctcttgcgccgccctgataagaccgtcactactgacgatgtgccggag
acggcgcctattgatggccagttcttgagatacaagtggtatcgtatacaaaatgataaa
aaagtggctgtctgtagcgtacatccatctgagcaagcgacattgcagtgtctaggatgc
gtcaaggccaaactacctgtttccaaaagttaccattgttcacccaagtgcttctcagat
gcatggcagcatcaccgtgttctgcatgaccgcgctgctagtgctgtaaatgaaaatgga
aatgaggaggaagaggtgtttgggcgctttaatagctcaggatctggtgttctcaacact
agcttatctggttctgtgtcaagcactagtttaacaaatggttccacacctttgtatcct
gctgctgttactcaaagaagtggtggtgaaacatggtttgaagtgggacgttctaaaact
tatacgccaaccgctgatgatattgggcatgttctgaagtttgagtgtgctgtagttgat
gttgaaaccaaagtacctgtgggaccccctaatgccatattaacttcccgtgtgattcca
gcaccctctcccagtccacgccgattggttcctgtcaatggagttgatgtgatggggaat
attgattcagatggccgtatttcatcttctggaacttttactgtgctttcatacaacatt
ttgtctgatgtgtatgccacaagtgaatcatacagctactgtccttcatgggcactttct
tggccataccgcaggcaaaatctgttgcgagaaattgtaggctaccgtgcagatattgtt
tgtcttcaggaggttcaaagtgatcattttgatgaatttttcgccccagagctggacaaa
catggttatcaagcgctatacaagagaaaaacaaatgaggtttacagtgggaacacgcaa
acaattgacggttgtgcaactttttttcgtagagacagattttcacatgtcaaaaaatat
gaggttgaatttaataaggctgcccagtctttgacagatgccatgattccaactaatcag
aagaagagtgcgttaaatcgattagttaaggataatgttgcgctcatagtggttctggaa
gcaaaatttagcaatcagggagttgataatccagggaaacgacagcttctttgtgtggca
aacacacatgtaaacgtccaccaagatctgaaggacgtcaagctctggcaggttcatact
ctcctgaaaggattagagaaaatagctgccagtgcagatattccaatgttggtgtgtggg
gattttaattctgttcctggaagtgctcctcatacacttctggctatgggaaaggtggat
ccgtcacatattgatttacaagtagatcctcttaatatattgcgccctctcagcaagctg
atacatcagcttccactggttagcgcatattcatcctttgcaaggttgggagttggtctt
ggtttggagcagcaaagaaggagaatggaccccacaacaaatgaaccgttatttacaaat
tgcactagagattttattggtaccctagattacatattttacactgcggactctttaacg
gtggagtccttgttggagctcttggatgaagaaagcttaagaaaagatacagcacttcct
tctccagagtggtcatcagaccacattgcacttcttgctgagtttcggtgcaagcctaga
attagacgttga
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