Rosa chinensis (China rose): 112192537
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Entry
112192537 CDS
T06020
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112192537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112192537
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
112192537
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
112192537
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
112192537
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112192537
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112192537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
HIT
zf-C2HE
AAA_18
Zeta_toxin
POT1
AAA_16
G-alpha
CPT
Viral_helicase1
AAA_22
nSTAND3
AAA
DO-GTPase1
AAA_17
ABC_tran
RsgA_GTPase
MeaB
Motif
Other DBs
NCBI-GeneID:
112192537
NCBI-ProteinID:
XP_024188092
LinkDB
All DBs
Position
3:10194307..10197841
Genome browser
AA seq
755 aa
AA seq
DB search
MDMDVDEPTKGQEEKQGKPIIVVLMGAPGSGKSTFCEQVMGSSVRPWVRVCQDTIKNGKA
GTKAQCIESARSALREGKSVFIDRCNLEKEQRDEFVKLGGPQVDVHAVVLDLPAKLCISR
SVKRTGHEGNLQGGKAAAVVNRMLQKKELPNLSEGFGRITFCQNESDVESAIRTYSGLGP
LDTLPHGTFGQKSPGAKVQLGIMKFLKKTDVPTNTESTSNKVQDSNASQITGGKDTVKGT
GLFTESGSMESKKGEQPVVGSAGTDVSLDNAPTLAFPSISTADFQFDLEKASDIIVEKVA
EFVNKLGNARLVLVDLTHKSKILSLVRAKASQKNIDSKRFFTFVGDITKLHSEGGLCCNV
IANAANWRLKPGGGGVNAAIFNAGGPALEVATKEQAKSLYPGNAVVVPLPSTSPLFCREG
VTHVIHVLGPNMNPQRPNYLDNDYSKGCKILHDTYTSLFEGFASIVRTQKKVFKGSFGNL
RLKLPESKDHSESGPTNHSTNTYQKIKREDLHESERNKRSKGDQAEAENDSDSNASKSNL
HSDGSKNKSWGTWAQAVYNIAMHPEKQRDVVLEISDDVVVLNDLYPKAQKHLLVVARHPG
LDRLADVCKEHIQLLRTMHAVGLKWAEKFLHDDSTLVFRLGYHSEPSMRQLHLHVISQDF
NSAHLKNKKHWNSFNTAFFRDSVDVLEEVSSDGKAILNDDESLMSMELRCNRCRSAHPTI
PKLKLHIGRCRASFPSTLLENGRLVTAPSNSSNDP
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggacatggacgttgatgaaccaaccaaaggccaagaagaaaagcaaggaaagcccata
atcgtagtattgatgggtgcacccggtagcggcaagtccacattctgcgaacaagtcatg
ggctcctccgttcgtccctgggtccgggtctgccaggataccatcaagaatgggaaagcc
ggtacgaaagctcagtgtatagagagtgcgaggagtgcattgagggaagggaagagtgtg
tttatagatagatgcaatctggagaaagagcaaagagatgagtttgtgaagctgggtggt
cctcaggtggatgttcatgctgtggtgcttgatcttcctgctaagctttgtatctcgcgg
tcggtgaagcgaactggccatgaggggaacttgcaaggtggaaaagctgcggctgttgtg
aatagaatgctgcagaagaaagaattgccgaatctgagcgaagggtttggtaggatcact
ttttgccagaatgagagtgatgttgaatctgccattcgtacatatagtggactcggtccg
ttggatacacttcctcatgggacttttggccagaagagcccaggtgcaaaagttcaactt
ggtataatgaaattcctaaagaaaacagatgttcctactaatactgaatcgacttcgaac
aaggttcaggattctaatgcttctcaaattactgggggaaaggatactgtgaaaggaaca
ggtttgtttactgaaagtggtagtatggagtccaagaaaggtgagcagcctgtcgtaggt
tctgctggcactgacgtctctcttgacaatgctcccaccctggcatttccatctatttcc
acagcagattttcagtttgaccttgagaaggcatctgacattattgtagagaaagttgca
gaatttgtaaataaacttggaaatgcaagacttgttttagtggacttgactcataaatcg
aagattttgtccttggtgagggctaaagcttcacagaaaaacattgactccaagaggttc
ttcacatttgtgggagatatcactaagcttcattcagaaggaggtctttgctgcaatgtg
atagctaatgctgctaactggcgacttaaaccaggaggtggtggtgtcaatgctgcaatc
ttcaatgctggaggtccagctttagaggttgcaaccaaagaacaagccaaatctctgtat
cctgggaatgctgtggttgttcctctcccttcaacttctcctttgttttgtagggaaggg
gtaacccatgtcatacatgttcttggacccaatatgaacccacagagaccaaattatctt
gacaatgactatagcaaaggctgcaaaattctccatgacacttatacttcactttttgaa
ggttttgcatcaatagtgaggacccaaaagaaggtatttaagggaagctttggaaacctt
cggttgaagctgccagagtcaaaagatcactctgagagtgggcctacaaatcactctaca
aatacctatcaaaagatcaagagagaggatcttcatgaatctgaaaggaacaaacggagt
aaaggagatcaagctgaagctgaaaacgactctgattctaatgctagtaaatcaaacctc
cactctgatggaagcaagaataaatcctggggaacatgggcccaggctgtctacaacatt
gccatgcatccagagaagcagagggatgtagtactagagatatcagatgatgtcgttgta
ctaaatgatctttatccaaaggcacaaaagcatctcctggtggtagcgcgacatcctggt
cttgatcgcttggcagatgtatgcaaagaacacattcagttgctaaggacaatgcatgcg
gttggtttgaagtgggctgaaaagttcttacatgatgattcaacattggtctttcgtctt
ggatatcactcggaaccatcaatgcgacagctgcacctacatgtaatcagccaggatttt
aattcagcacatttgaagaacaagaaacattggaattcctttaatactgctttctttcga
gactctgtggatgtgctagaggaagtcagtagtgacggaaaggcaatactgaatgatgat
gaaagcctgatgtctatggagttacgatgtaatcgatgtagaagtgctcaccccaccatt
cccaaattgaaattgcacattggcagatgtcgagcctccttcccaagcaccctgcttgaa
aatggtcggctggtaaccgcaccaagcaattctagcaatgatccatag
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