KEGG   Rosa chinensis (China rose): 112192650
Entry
112192650         CDS       T06020                                 
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112192650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rcn03036]
    112192650
   03400 DNA repair and recombination proteins [BR:rcn03400]
    112192650
Chromosome and associated proteins [BR:rcn03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    112192650
DNA repair and recombination proteins [BR:rcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     112192650
SSDB
Motif
Pfam: HhH-GPD RNA_polI_A34 Extensin_1
Other DBs
NCBI-GeneID: 112192650
NCBI-ProteinID: XP_024188234
LinkDB
Position
3:49537677..49541777
AA seq 547 aa
MGEKTYVRMGEVAVAVAVAETTSNRRRSRKTVGQKPKPVVVSRYFQNQPVTKPVVVSRYF
QNQPVTKPVVVSRYFQNQPVTKPVVDFQNQPVTKPAVVVSRYFQNQPVTKPVADFQNQPV
TKPAAVVSRYFQNQPVVVSRYFQTQPVTKAVVEIGTQPENGKITSSESKSESMSDHVNVN
AVTEIRSKKEKRKRRRHDADNDGNSKMTKKKKKKKKKTLQVEEADINQTRSAILNFEDML
SQFAYEGCGVEWNNKHNKMPKTLSQGLDTTIYPCSQASKTGRNSTEDHATVPGTVKQAQV
HPQAAERRRKNETRPSTEIRKVSHYFQTSSNECKDTNVKPPKRHSKSRGETFQKEATKKN
NADGHLLQSTNRLRKKSPKNRATLTASQRKDEAYRRKTPDNTWIPPRSEFGLLQEDHYHD
PWRVLVICMLLNRTTGTQLKEVLSDFFTLCPNAKAATEVATRDIEQVIRSLGLHKRAEMI
QRMSQEYLGESWTHVPELPGVGKYAADAYAIFCTGMWERVKPADHKLNIYWEFLHSIKSK
PRPAVFI
NT seq 1644 nt   +upstreamnt  +downstreamnt
atgggagagaaaacatatgtgagaatgggagaggtggcggtggcggtggcggtggctgag
accacgtccaacaggaggaggagcagaaaaactgtcgggcagaagccaaagccggtggtg
gtgtctcgctatttccagaatcagccggtgaccaagccggtggtggtttctcgctatttc
cagaatcagccggtgaccaagccggtggtggtttctcgctatttccagaatcagccggtg
accaagccggtggtggatttccagaatcagccggtgactaagccggcggtggtggtttct
cgctatttccagaatcagcctgtgaccaagccggtggctgatttccagaatcagccggtg
actaagccggcggcggtggtttctcgctatttccagaatcagccggtggtggtttctcgc
tatttccagactcagccggtgactaaggcggtggtggaaatagggactcaaccagaaaac
ggtaagataacctcctccgagtcaaagtcagagtcaatgtcagaccatgtgaatgtgaat
gcagttactgaaattagaagcaagaaagaaaagagaaagaggagacgccatgacgctgac
aacgatggcaattctaaaatgacaaagaagaagaagaagaagaagaagaagactcttcaa
gtagaggaggcagatattaatcaaactaggagcgccatcttgaattttgaggatatgctt
tctcaatttgcttacgagggttgtggtgttgaatggaataataaacataacaagatgccc
aaaacgctttcccaaggtctagatactactatctatccttgtagtcaagctagtaagacg
ggccggaactcaactgaggaccatgccactgtgcctggaaccgtgaaacaagcccaagtg
catccacaggctgcagagaggaggaggaagaatgaaactcggccatccacggaaatccga
aaggtttctcattacttccaaacctcaagtaatgagtgcaaggatacaaatgttaaaccc
cctaaacgccattcaaaatctcgcggggagacctttcagaaggaggccaccaaaaaaaat
aatgcagatggccacttgttgcaaagtacaaacaggctcaggaagaaatctcctaaaaac
agggctactcttaccgcttcacagaggaaggacgaagcataccgaaggaaaactccagat
aacacgtggattcctcctcgctctgaatttggtctcctccaagaagatcactatcatgac
ccttggagagtgttggttatatgcatgctccttaatcggacaacaggaacccagttaaaa
gaagttttatcagatttcttcactttgtgtcctaatgcaaaggctgctactgaggttgcc
acgcgggatatagaacaggttataagatctcttggtctacataagagagccgagatgata
cagcgcatgtctcaggagtatttaggggaaagctggacccatgtacctgagttgcctggg
gttggcaagtatgcagctgatgcatatgcaatattctgcactggtatgtgggaaagagtg
aaacctgctgaccacaaactaaatatatactgggaatttctccacagcatcaagagtaag
ccgaggcctgcagtttttatttga

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