Rosa chinensis (China rose): 112192770
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Entry
112192770 CDS
T06020
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112192770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112192770
03012 Translation factors [BR:
rcn03012
]
112192770
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112192770
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112192770
Translation factors [BR:
rcn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112192770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
FoP_duplication
nSTAND3
T2SSE
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112192770
NCBI-ProteinID:
XP_024188407
LinkDB
All DBs
Position
3:complement(22228285..22237290)
Genome browser
AA seq
1041 aa
AA seq
DB search
MCCLLLTLRATTNHFLPTHFLAAPRLLTFRSAISTLAMSSRSNFQGGRSRGGPNSRGGAR
RGGRGGGRGGGGGRGGEQRWWDPVWRAERLRQQAAEMEVLDASEYWGKMEQFRSGAEQEM
IIRRNFSRHDQQTLYEMAYELGLHFHAYNKGKALVVSKVPLPDYRADLDDVHGSTQKEIR
MSTETAERVGSLLQSSQGQGSKQAFGNVASVASGSGQGNKLTTVSENTTKPSSSLEPDTV
KEKEKLSLQLKDLQEKMKVSNSLKAMLTFREKLPAFNVKSEFLRAVSENQVLVVSGETGC
GKTTQLPQFILEDEISRLHGAECNIICTQPRRISAMSVAARISSERGENLGETVGYQIRL
ESKRSAQTRLLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRR
PDLRLILMSATINADLFSKYFGNAPTIHIPGLTFPVAELFLEDVLEKTHYIVESESEKME
RGNSRRRRQQDSKKDPLTELFEDVDIDLHYKSYSTSTRKSLEAWSGSQLDLGLVEATVEH
ICRYERDGAVLVFLTGWDDISKLLDKVKGNRFLGDPEKFMVLPLHGSMPSINQREIFDRP
PTNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRR
GRAGRVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKALQ
PPDSLAVQNAIELLKTIGALDDREELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALT
IAAALAHRDPFILPIDRKEEADAAKRSFAGDSFSDHIAVVKAFEGWKDAKHNGSGKSFCW
DNFLSPVTLQMMEDMRLQFVDLLSNIGFVDKSRGANAYNQYSHDLEMVSAILCAGLYPNV
VQCKRRGKRTTFYTKEVGKVDIHPGSVNAGVHLFPLPYMVYSEKVKTASIYIRDSTNISD
YSLLLFGGNLIPTKTGGGIEMLGGYLHFSASKSVLELIRKLRRELDKLLNRKIDNPALDV
SSEGKGVVSAVVELLHSPNVH
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgtgttgtttgctcttaactttgcgcgcaaccaccaaccactttctccccactcacttc
ctcgccgctccacgactcctcacttttcgctctgccatctcaactctcgccatgtccagc
cgctccaacttccagggcggccgcagcagaggcggccctaactcccgcggcggcgctcgc
cgtggaggccgaggaggaggacgcggcggcggcggcggccgaggcggcgaacagcgctgg
tgggaccccgtgtggcgagccgagcgactgaggcaacaagccgcggagatggaagttctt
gatgcgagtgagtattgggggaagatggagcagttcagaagcggagcggagcaggagatg
ataataagacgtaattttagtcggcatgatcagcaaaccctatatgaaatggcctatgaa
ctagggcttcacttccatgcatataataaggggaaggctcttgtggtcagcaaggttcct
ctgccagattatcgggcagaccttgatgatgttcatggttccacacaaaaagagattcgg
atgtctacagagactgcagagagagtcgggagtcttttgcaaagctcgcaggggcaggga
agtaagcaagcttttggtaatgttgcttcagtggcgtctgggtctggccaggggaacaaa
ctaacaactgttagtgaaaatacaaccaaacccagctccagcttggaacctgatactgtt
aaggagaaagagaaacttagccttcaacttaaggacttgcaggaaaaaatgaaggtaagt
aatagtctgaaagcaatgctgacgttccgagaaaagcttcctgcattcaatgtgaagtct
gagttcctgagagctgtttctgaaaatcaggtgttggtagtctcgggtgagacaggttgt
ggcaaaacaacacaacttcctcagtttattctagaagatgagatttcacgtctgcatggt
gctgagtgcaacataatatgcactcagcctcgtcgtatatctgccatgtctgttgctgct
cgtatatcctctgaaaggggagagaatcttggtgaaactgttggttatcagattcgactg
gaatcaaagcgctctgctcaaacaagattgctattttgcacaactggagtattacttcgt
cagttggttcaagacccacagttaactggtgtgagccatttgttggttgatgaaatccat
gaaagaggcatgaacgaggactttttactaataattttgcgagaccttcttcctcgacgt
ccagatctacgacttattctaatgagtgctaccatcaatgctgacttgttttccaaatac
tttggaaatgccccaacaatacatataccgggattaacgttccctgtggcagagctattt
ctagaagacgttttggagaaaactcattatatagtcgagtcagagtccgagaagatggag
aggggaaattccaggagaaggagacagcaagactccaagaaggatcccttaactgaacta
tttgaggatgttgatattgatcttcactacaaaagttatagcacatctacaagaaagtct
ctggaagcttggtctggttcacagcttgatttgggtctggtggaggcaactgtggaacat
atatgtcgctatgagagagatggagcagttcttgttttccttacgggctgggatgatata
tcaaagttacttgacaaagttaagggaaatagattccttggagatcccgagaagttcatg
gttcttcccctgcatgggtcaatgccttctatcaatcaacgagaaatatttgatcgtcct
cccactaacaaaagaaaaattgtgctagcaacaaacattgcagagagcagtattaccata
gatgatgtcgtgtatgtcatagactgcggaaaggcaaaagaaacgagttatgatgcttta
aacaagttggcttgtctattaccatcatggatttcaaaggcttcagcacatcagagacga
gggcgtgctggccgtgtccaacctggagtttgttacagactatatccaaaaatgattcac
gatgcaatgctccaatatcagttacctgaaattctccggacacctttgcaagagttatgc
ctccatataaagagtttgcagcttggagctgttggatcatttttggcaaaggcacttcaa
ccaccagattctcttgcagttcaaaatgccatcgaacttctcaaaactattggagcttta
gatgatagggaggagcttactccgcttggtcgccatctttgtacactaccattggatcca
aacattggaaagatgcttttaatgggttctatctttcaatgcctcaatcctgccttaaca
attgctgctgccttagctcatcgagacccatttatcctaccaatagataggaaagaggaa
gctgatgctgcaaaaagatcctttgctggtgattctttcagtgatcacatagcagttgtt
aaagcttttgaaggatggaaagatgcaaaacataatggatcaggaaaatcattctgttgg
gataactttttatcaccagtaaccttgcagatgatggaggatatgaggttgcagtttgta
gatctattatcgaacattggctttgtcgacaaatccaggggtgctaacgcttacaaccaa
tacagccatgacttggagatggtgtctgcaattctttgtgctgggctttacccaaatgtt
gtgcagtgtaaaagaagaggaaagcgaacaacattctacaccaaagaagttggtaaagtc
gatatccatcctggatcagtcaatgctggggttcacttattccctctgccttacatggta
tatagtgaaaaagtgaagacagccagcatttacatcagagactctacaaatatatcagat
tattctttgcttttgtttggtggtaatctcattccaaccaaaactggagggggcattgag
atgcttggaggttaccttcatttctctgcatcaaagagtgttttggagttgattcggaaa
ttgcgccgtgaactcgacaagcttttaaacaggaagattgacaacccagcattggatgtc
tctagtgagggaaagggagtagtatctgctgtggttgagctattgcatagcccaaatgta
cactaa
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