Rosa chinensis (China rose): 112192964
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Entry
112192964 CDS
T06020
Name
(RefSeq) DNA mismatch repair protein MLH1 isoform X1
KO
K08734
DNA mismatch repair protein MLH1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03430
Mismatch repair
rcn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112192964
03460 Fanconi anemia pathway
112192964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112192964
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
112192964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112192964
NCBI-ProteinID:
XP_024188690
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All DBs
Position
3:43446163..43459470
Genome browser
AA seq
728 aa
AA seq
DB search
MEEEEEQVAMEPPKIHRLDESVVNRIAAGEVIQRPVSAVKELVENSFDAHSSSINVVVKD
GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSSFEDLQSIKSMGFRGEALASMTYVAHV
TVTTITKGQLHGYRVSYKDGVMENEPKACAAVKGTQIMIENLFYNMSARRKNLQNSADDY
SKIVDLLSRFAIHHTSVSFSCRKHGAGRADVSSVATISRIDAIRSVYGVSVARSLMKVEA
LDNDPSSSVFQMDGFISNSEYVAKKITMVLFINDRLVDCTALKRALEIVYAATLPKAAKP
FIYMSIVLPPEHVDVNVHPTKREVSLLNQEVIIEKIQSVVESRLRSSNETQIFQEQTVEP
PSSSQMISSKDSNRNPTPSGSKSQKVPVNKMVRTDSSDPAGRLHIYLHAESRGHLEKNTS
LTAVRSSVRQRRNPKETADLSSVQELIADIDSNCHSGMLDIVRHCTYIGMADDVFALLQH
DTHLYLANIVSLSKELMYQQVLRRFAHFNAIQLSNPAPLKELIVLALKEGDTDPESTEND
ELNEKIAEMNSELLKQKADLLEEYFSIHIDKDGNLSRLPVILDQYTPDMDRVPEFALCLG
NDVDWEEEKKCFQVISAALGNFYAMHPPMLPNPSGDGLQFYQKRKLFRNNEGSLSCNTGA
DDMMTEDEIEHELVAEAETAWAQREWSIQHVLFPSMRLFFKPPNSMATNGTFVRVASLEK
LYRIFERC
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaagaagagcaagtggcgatggagcctcctaaaattcaccgcctagacgag
tctgtagtgaaccgaatcgctgccggtgaggtcatccaacgccccgtctcggctgtcaag
gagctcgtcgagaacagctttgacgcccactcctcctccattaacgttgtcgtcaaggac
ggcggcctcaaactcatccaagtctccgatgacggccacggaatccgatatgaggacttg
ccgatactgtgcgagcggcatacgacatcgaaattgtcatcgtttgaagacctgcagtcc
ataaagtcgatggggtttcgaggagaagctcttgcgagcatgacgtatgtggctcatgtg
acggtgacgacgatcaccaaagggcagttgcatggttacagggtttcttataaagatgga
gtgatggagaatgagccgaaggcgtgtgctgccgtaaaaggaactcagataatgattgag
aacttattctataacatgtctgcccggagaaagaatctgcaaaactctgctgatgattat
tcaaagattgtagatttgttaagccggtttgccattcatcacacaagtgttagcttctcc
tgcagaaagcatggagccggtagagcagatgttagttctgttgccacaatatcaagaatt
gatgcgattcgttcagtttacggggtgtcagttgcccgcagtctgatgaaagtagaagct
ttggacaatgatccgtcaagctcagttttccagatggatggctttatctccaactctgaa
tatgttgcgaagaagataactatggtgctttttataaacgatagattggtggattgcact
gcattgaagagagctctagaaattgtttatgccgctacattgccaaaagcagcaaaaccc
ttcatatacatgtcaattgtattaccacctgaacatgttgatgtgaatgttcacccaaca
aagagagaggtgagtcttctgaatcaggaagtcatcattgagaagatacagtcagtggtt
gaatcaagattgagaagctccaatgagacacagatatttcaggagcagacagttgaacca
ccttcatccagccaaatgatttctagcaaggattcaaatcgtaatcctacgccatctggg
tcaaaatcacaaaaggttccagtgaataaaatggtcagaacagattcatcggatcctgct
ggaaggttgcatatttacttgcacgcagaatctcgtggccatcttgaaaagaatactagc
ttgactgctgttagatcgtctgttagacaaagaaggaacccaaaggaaactgctgatctg
agtagcgttcaggagcttattgctgatattgatagcaattgtcattctggtatgctagac
attgtgagacactgcacatacattggaatggcagatgacgtctttgcattgcttcagcat
gacacacacctctaccttgcaaatatagtgagcttgagcaaagagctcatgtatcagcaa
gttctacgtcgatttgctcattttaatgctatacaattaagtaacccggccccgctgaag
gagttgattgtgttggcactgaaagagggggacacagatccagaatccactgagaatgat
gaactaaatgaaaagattgcagaaatgaattcagaactacttaagcaaaaggctgatcta
ctagaggagtacttttccattcacatagataaagatggaaatttgtccaggcttcctgtc
atacttgaccaatacacacctgacatggatcgtgtcccagaatttgcgctttgtttgggc
aacgatgttgattgggaagaagagaaaaaatgcttccaagtaatttcagctgcacttggg
aacttttacgccatgcatcctcctatgttacccaacccatctggtgatggtttgcaattt
taccaaaaaaggaagttgttcaggaataatgaaggaagtctctcttgcaatactggtgcg
gatgatatgatgacggaggacgaaatcgagcacgaactagttgcagaagcagagactgca
tgggcacagcgcgaatggtcaatccagcatgtattgtttccatcaatgaggctctttttt
aagccaccaaattctatggctacaaatggaacatttgttcgagttgcttcactagaaaag
ctgtacaggatttttgaaagatgctga
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