Rosa chinensis (China rose): 112193025
Help
Entry
112193025 CDS
T06020
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112193025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112193025
03041 Spliceosome [BR:
rcn03041
]
112193025
03036 Chromosome and associated proteins [BR:
rcn03036
]
112193025
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112193025
Spliceosome [BR:
rcn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112193025
Complex B
112193025
Complex C
U2 SnRNP specific factors
112193025
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112193025
TFTC complex
112193025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML_2
WDR55
Motif
Other DBs
NCBI-GeneID:
112193025
NCBI-ProteinID:
XP_024188799
LinkDB
All DBs
Position
3:complement(39556665..39561434)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGNFSGGKHQEIVVARGKVLDLIRPDDNGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMVGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEVDQDSSGNAEKEAQKHLTFYELDLGLNHVSRKWSDQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGQADVRAVIPRRADLPAERGVLVVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHNNDLVSELKIKYFDTIPVTTSICVLKSGFLFAASEFGNHSLYQFQAI
GEDPDVESSSASLMETEEGFQPLFFQPRKLKNLVRIDQVESLMPIMDMKVSNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNVTDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
AIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSIPESLLFLEVQASIGGEDGADHPANLFL
NAGLRTGILFRTVVDMVTGQLSDSRSRFLGLRAPKLFSINIRGKHAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGSALRVFTIERLGETFNETVIPLRYTP
RKFVVQVKRKLLVIIESDQGAFTAEEREAAKKECFEAAELGENGNGNVEQMENGDTEDDP
LSDEHYGYPKAESDKWVSCIRVLDPKTATTTCLLELLDNEASFSVCTVNFHDKEYGTLLA
VGTAKGLQFWPKKSITAGYIQIYRFLDDGKSLELLHKTQVDGVPLALCQFQGRLLAGIGP
VLRLYDLGKKRLLRKCENKLFPNNIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFA
DDCVPRWLTASFHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQKASLIPGGGECIIYGTVMGSLGALLAFTSRDDVDFFSHLE
MYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPTLPMDLQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctcactctccagcgcgccactggcatagtctgcgccatcaacggc
aacttctccggcggaaagcaccaggaaatcgtcgtcgccagaggcaaagtgctcgacctt
attcgccccgacgacaacggtaagatccagactcttctctccgttgaaattttcggcgcc
attaggtctttagctcagtttaggctcactggctctcagaaagactatattgtagtcggt
tccgattcgggccggattgttattctagagtacaacaaggagaagaatgtgtttgataag
atccaccaggagacttttggcaaatctgggtgtaggaggatagttccgggtcagtacttg
gctattgaccccaaagggagggctgttatggttggagcctgtgaaaagcagaaactagtt
tatgttttgaatagagatacatctgctaggttgaccatatcgtccccgctggaagctcat
aagtctcatactatagtgtattcaatttgtggggtggactgtgggtttgataatcctatt
tttgctgccattgagttggattattcggaggtggatcaggattcgagtgggaatgcggag
aaggaggcccagaagcatttgactttctatgagctagatttggggcttaaccatgtctcc
agaaagtggtcggaccaggttgataatggagccaatttgctggttactgttcctggaggt
ggggatgggccgagtggtgttctggtctgtgcggaaaactttgtgatttataagaaccag
ggacaagcggatgttagggctgtgatcccgaggcgtgcggatttgcctgctgagcgcggg
gttcttgtagtttcggcagcgactcacaagcagaagtccatgttcttctttcttttgcag
actgagtatggagatatattcaaggtcactttggagcataacaatgatcttgtgtcagaa
ttgaagatcaaatactttgatacaattccagttacaacttcaatctgtgtattgaaatca
gggtttttgtttgctgcttcagagtttgggaatcactctttgtaccaattccaggcaata
ggtgaagatcctgatgtggagtcttcctcggcttctttgatggaaactgaagaaggtttc
cagcctttgtttttccagcctagaaaactgaagaaccttgttaggattgatcaggttgag
agcttgatgcccataatggatatgaaggtctcaaatctctttgaagaagaaacacctcag
atatttacgctttgtggacggggtccgcgttcatccctcaggatactaagacctggtttg
gctatcagtgagatggctgtgtcagagcttcctggagtgcctagtgcagtctggacagtg
aaaaagaatgtgactgatgagtttgatgcatacattgtggtgtcattcgcaaatgctact
cttgtgctttcaattggtgagacagttgaagaagttagtgatagtgggtttcttgatact
accccatcacttgcagtgtctttgataggtgatgattctcttatgcaagttcacccaaat
ggcattaggcatattagggaagatggacgtatcaatgaatggagaactcctggaaagaga
gccattgttaaggttggctccaatagacttcaggttgttattgctctcagtggaggagaa
cttatatactttgaagttgatatgactggtcaattgatggaggttgagaagcatgaaatg
tctggagatgtagcttgtctggacattgccccagtacctgaagggagacagagatctcgt
ttccttgcagttggttcatatgacaacacaattcgtatattatcattggatcctgatgac
tgtatgcagattctgagtgttcaaagtgtttcttcaattccagaatctctcctttttctt
gaggttcaggcttcaattggtggtgaggatggtgctgatcatcctgccaaccttttcctt
aatgccggcctgcgaactgggattttgttcagaacagtggtggatatggtgacaggtcag
ctttctgattcccgttctcgattcttaggactaagagctccaaagctattttctattaat
ataagaggcaagcatgccatgctttgtttgtcaagtcgcccctggcttggttatattcat
caaggacatttcctgttaacacccctatcgtatgagactcttgaatatgcggcctcattt
tcatctgatcaatgtgcggaaggtgtagtcgccgttgctggcagtgctttgagggttttt
actattgaaagactgggagaaacatttaatgaaactgttattcctctgaggtacacccct
agaaagtttgtggttcaagtgaaacgaaagcttttggtaattattgaaagtgatcaagga
gcgttcaccgcagaagagcgtgaagctgcaaaaaaggagtgctttgaggctgcagaacta
ggtgaaaatggaaatggtaatgttgagcagatggaaaatggtgatactgaggatgacccc
ctctctgatgagcattatggctatcctaaggcagagtctgacaaatgggtttcttgcatt
cgagttcttgacccaaagacagcaactacaacctgtttgctggagcttcttgataacgag
gcctcattcagtgtatgtacggtgaattttcatgataaggagtacggtacgcttttggct
gtgggtactgctaagggacttcaattttggcccaagaaaagtataactgcaggatatatt
caaatatatcgatttctagatgatggaaagtcccttgaacttttgcacaagacacaagtg
gatggtgttcctctcgctttatgtcagtttcaaggaaggttactcgcagggataggacca
gtgctcagactatatgatttggggaagaaaagactgcttaggaaatgtgaaaataagctg
tttcccaacaatatcgtatccattcaaacgtatcgtgatcgaatttacgttggtgacatt
caagagtcattccactactgcaagtataggcgggatgagaatcagctgtatatatttgct
gatgattgtgttccaagatggcttacagcatcattccatatagattttgataccatggca
ggtgcggacaagtttggaaatgtgtattttgtgcggttaccacaggatgtttcagatgag
atagaagaagatccaacaggtgggaggataaaatgggagcaggggaagttgaatggtgct
cccaacaaagtagaggagatagtgcagtttcatgttggtgatgtggtcagctgcttgcag
aaggcatctctcattccaggtggtggtgagtgcatcatttatgggacagtgatgggtagt
ttgggtgcattgcttgcattcacctcccgtgatgatgttgacttcttttctcacctggag
atgtatatgaggcaagaacatccccccttgtgtggaagagatcacatggcttacagatca
gcttatttcccggttaaggatgttattgatggggatctatgtgagcagtacccaacattg
cctatggatctacagaggaaaattgcagatgagttggacagaactcctggagagatactg
aagaaacttgaggaaattcgaaataagatcatttaa
DBGET
integrated database retrieval system
