Rosa chinensis (China rose): 112193338
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Entry
112193338 CDS
T06020
Name
(RefSeq) protein PIR
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112193338
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112193338
Factors involved in mRNA localization
Other mRNA localization factors
112193338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Motif
Other DBs
NCBI-GeneID:
112193338
NCBI-ProteinID:
XP_024189208
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All DBs
Position
3:complement(925533..937979)
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AA seq
1284 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQAEVQGPGVWVSTDTGATDSPIEYSDVSAYRLSLSEDTKA
LNQLNALILEGKEMGSVLYTYRSCVKALPQLPDSMKQNQADLYLETYQVLDLEMSRLREI
QRWQASAASKLAADMQRFSRPERRINGPTVTHLWSMLKLLDTLVQLDHLKNAKASIPNDF
SWYKRTFTQVSVQWHDTDSMREELDDLQIFLSTRWAILLNLHAEMFRVNNVEDILQVLIV
FAVESLELDFALLFPERHILLRVLPILVVLATSSEKDSESLYKRVKINRLINIFKNDPVI
PAFPDLHLSPAAIMKELSMYFQKFSAQTRLLSLPSPHELPAREAQDYQRHYLIINHIGSI
RAEHDDFTIRFASSMNQLLLLKSTDSADIEWCKEVKGNIYDMIVEGFQLLSRWTARIWEQ
CAWKFSRPCKDIVPSESQEASASFSDYEKVVRYNYSAEERKALVELVSYIKSIGSMMQSS
DTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSKSE
SGPLQHGSEESKGNVFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIPV
NDLKQLETFFYKLSFFLHILDYSATVAMLTDLGFLWFREFYLESSRVIQFPIECSLPWML
VDYVLESHNAGILESVLIPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSKLCD
TIFTYYKSWAASKLLDTSFLFALDNGERYSVEPMRFTTLLKMTRVKLLGRMIDLRSLITE
RMNKVFRDNIEFLYDRFESQDLCAIVELENLLDTLKHAHELLSRDLSIDSFSLMLNEMQE
NISLVSYSSRLASQIWSEMQNDFLPNFILCNTTQRFTRSAKVPLVPVQKPSLPHAKPNFY
CGTQDLNAAHQSFARLHSGFFGMPHMFSIVRLLGSRSLPWLIRALLDHISNKTATLEPLI
TGLQEALPKSIGLLPFDGGVTGCMRLVKEQLTWGTKSELKGEVLRGIKEIGSVLYWLGLL
DIVLRETDTTHFMQTSPWLGLLPAADGQILHSQDGGESPIVNLFKSATSAIVSNPGCPNP
ASFNTLSKQAEAADLLYKANMNTGSVLEYSLAFTSAALDKYCSKWSAVPKTGFIDITTSK
DFYRIYSGLQIWYLEESVRVLPNNQEVLGDSVAWGGCTIIYLLGQQLHFELLDFSYQVLN
VAEVEVASITQTHKSPHYVQGWDGLLEVMKKARRLNNHVFSMLKARCPLEDKTACAIKQS
GAPLHRIKFENTVSAFETLPQKEA
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggctgttccggttgaagaagccattgctgcgctatctacattctcactggaggatgag
caagcagaggttcaaggaccaggagtttgggtttcgactgacaccggagcaactgacagt
ccaattgagtatagcgatgtttctgcatatcgcttgtctttatctgaagacacaaaagct
ctcaatcaactgaatgctcttatactcgagggaaaggagatgggatctgtgctgtataca
tatcgtagttgtgtcaaggcacttcctcagcttcccgattctatgaaacaaaatcaagct
gacttgtaccttgaaacttatcaagttctggacttggaaatgagtcgcttacgtgaaata
cagcgctggcaagcttcggctgcatcaaagctagctgcagatatgcaacgcttctcaagg
cccgagagacgcattaatgggcctacagtaactcatctctggtccatgttgaagttactt
gacactttggtgcaacttgatcatcttaaaaatgcaaaggcaagcataccaaatgatttc
tcttggtataaaaggacattcacacaagtaagtgtacagtggcatgatactgattcaatg
agagaggagttggatgacttacagattttccttagcacaaggtgggccatcttgttgaat
ttgcatgctgagatgttccgtgtgaacaacgtagaagatattcttcaagtactcatagtt
tttgctgtcgagtcactagagctggattttgcacttctgttcccagagcggcacattctt
cttcgtgttctgccgattctagttgtcttagctacatcgtcagaaaaagatagcgagtct
ttgtacaagagagtgaaaatcaacagacttattaacatattcaagaatgatccagtaatt
cctgcatttccagatctccatctttctcctgctgcaatcatgaaagaattgtcaatgtac
ttccaaaagttttctgcccaaactcgtcttctcagccttccatcacctcatgagcttcca
gcccgtgaggcacaagattatcagaggcattatctaatcatcaatcatattggatccatc
cgtgccgaacatgatgacttcacaattcgttttgcttcctccatgaatcagctattgttg
ttgaagtcaacagatagtgccgatattgagtggtgcaaagaagtcaagggaaatatatat
gatatgattgttgaaggttttcagcttttaagtagatggactgcacgcatttgggaacaa
tgtgcatggaaattttctcgcccctgcaaggatatagttccctccgaatcacaagaggct
tcagcatcattttctgactatgaaaaggtggtacgttataactatagtgcggaggaaagg
aaagcgctggtggaacttgttagctacataaagagcataggatctatgatgcagtctagt
gacacattggtagctgatgctttatgggagacaatacatgccgaggttcaagattttgtt
cagaatacattggccactatgttgcgtactacctttcgaaagaagaaggacctttctagg
atcctttccgatatgcggactctttcagcagactggatggcaaatacaagtaagtctgaa
tctggaccccttcagcatggaagtgaagaaagcaaaggaaatgttttttatccaaggcca
gttgcaccaacagccgctcaggtgcactgcttgcagttcctgatatatgaagttgtttct
ggtggtaaccttaggaagcctggagggctctttgggaatagtggttctgagatccctgtt
aatgacctaaaacagttagaaacatttttttacaagcttagcttcttcctgcatattctg
gactattcagcgactgtcgcaatgttgacggatcttggtttcttatggtttagagaattt
tatttggagtcttctcgtgttattcagtttccgatcgaatgctctcttccttggatgttg
gtggattatgtgcttgagtcacataatgccggtattctagagagtgttttgataccattt
gacatctataacgattctgctcagcaagcattggttgtgctcaagcaacggttcctctat
gatgaaattgaggctgaggtggatcattgtttcgacatttttgtttcaaaactctgtgat
acaattttcacatattacaagagctgggcagcaagcaagctacttgatacgtcattcctt
ttcgcattggacaatggagaaagatactctgtcgagcctatgaggttcacaacactgcta
aagatgaccagagtgaagttgcttggaaggatgattgatttaaggagtttgattactgag
cggatgaacaaagttttcagagataatattgagtttctatatgatcgttttgagtctcaa
gatctatgtgctattgtggaactagaaaatctgctggataccttaaagcatgcccatgaa
ttgctctccagagatctttcaatagactcattcagtctaatgttgaatgagatgcaagaa
aatatatcactggtgtcatattctagtagacttgcctctcagatttggtcagagatgcag
aatgatttcttgccaaacttcatcctttgcaatactacccagcgttttacacgatcagca
aaggttcctcttgttcctgttcaaaagccatcacttccccacgccaagcctaatttctat
tgtggtactcaagatttaaatgcagctcatcaaagttttgcaaggttgcacagtggattt
tttggaatgcctcacatgttttccattgtaaggcttctagggtccagatcattgccctgg
ctaatccgagcacttctagatcatatatctaacaagacagctaccctggaacccttgata
acaggattgcaagaagcattgccaaaatctattggactgcttccttttgatggaggcgtg
acaggttgtatgaggcttgttaaggaacagcttacttggggaaccaaatcagagctcaaa
ggagaagttcttcggggtataaaggagattggaagcgtattatattggctggggcttctt
gatatcgtattgagagaaacagacaccacacatttcatgcaaacatccccttggttgggc
ttgcttcctgctgcagatggacaaatattacattctcaagatggtggagaaagccctatt
gtcaacctttttaaatcagctacttctgctattgtgtcaaaccctgggtgtccaaatccg
gcttccttcaataccttatcgaagcaggcagaagctgcagatcttttgtacaaggctaac
atgaacacgggaagcgtgctggaatattctctagcttttactagtgcagcactggataaa
tactgtagtaaatggagtgctgttcccaaaacagggtttattgatatcacaacttcaaag
gatttctatcgtatatacagtggccttcaaatttggtatctagaggagtctgttcgagta
ttgccaaacaatcaagaagtgctgggtgattctgtagcttggggtggttgcaccataatc
tacttgcttgggcaacagctgcatttcgagctcttggatttttcatatcaggtcctcaat
gttgctgaagtggaggttgcatcaattacccaaacccataagagccctcattatgttcag
ggatgggatggcctgttagaagtaatgaagaaagcaaggaggttgaacaaccatgtgttc
tccatgttaaaggcgcgttgccctcttgaagataaaacagcttgtgccatcaagcaaagt
ggtgcccctctgcaccggatcaagtttgagaacaccgtctctgcatttgaaacactgcca
cagaaagaggcctga
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