Rosa chinensis (China rose): 112193471
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Entry
112193471 CDS
T06020
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112193471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rcn04121
]
112193471
Enzymes [BR:
rcn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112193471
Ubiquitin system [BR:
rcn04121
]
Ubiquitin ligases (E3)
HECT type E3
112193471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
HEAT_2
Adaptin_N
HEAT
Motif
Other DBs
NCBI-GeneID:
112193471
NCBI-ProteinID:
XP_024189402
LinkDB
All DBs
Position
3:14633749..14641217
Genome browser
AA seq
1568 aa
AA seq
DB search
MESRGQKRSEIDDELPADKRACSSLEFRPSTSSSSQTPINSVSSTPERNDQNIHDHADHM
DTESEGGEPEKDSAYDSCDEDEEDQRHSDLRDYQRRRASGDHGRFQTIISSLSEEVDLSQ
HLVMLTELCEVLSFCTEDSLSGDTSNSLSPILVKLSRDETSADIMLLAIRAMTYLCDVYP
KSSVYLVRHDAVPALCQRLLAIEYLDVAEQCLQALEKLSREQPLACLQAGAIMAVLNYID
FFSTSIQRVALSTVVNICKKLPSEGPSPFMDAVPTLCNLLQYEDPQLVENVAICLIRITE
RVSQSSEMLDELCKHGLIRQATHFMSLNSRTTLSQPIHNGLIGLLVKLSSGSVVAFRTLY
ELNMSSILKDILSTYDLSHGMSSTHVVDGHCYQVYEVLKLLNELLPTSARDQDAPQLSEK
ESFLINRPELLEKFGRDILPSLIQVVNSGANLYICYGCLSVINKLIYLSTSDMLVELLKN
ANISSFLAGVFTRKDPHVLVSTLQIAELILQKFSDNFLDSFIKEGVFFAIDALLTPEKSS
LVTLNKCSKLVFPVSSGTRLLSDSSQKSASKEVLRCLCYAFPSSSPSGSEKGSCMLEKDS
VYSLAKHVRTKYFAPELCDPDKSLTDVLQKLRTFSASLSDLMNMSLDTCAPNQHEESFYG
IMHQVMEKLGGREPISTFELIESGILKSLMTYLSNDRYLRQKGDLVAAKGDIYAVEKRFE
VFARLLFSLPDPFSGDLPIVTLIRRLQSSLSTLENFPVILSHIPKQRNSYATVPYERYTA
YPCMRARFVRDKEETTLGDCCEDVLTVDPFSSLDAIEGYVWPKVNAKGTSRIKSATIEGQ
SECTPSNASSSQGGCPNTGEPESMSADLPELKADEVNLTQPEPEQEPSFGQTNPGTSLDE
TYTDTVEKEVEAQSEEDTQMEEQCPLSCSSEDASPKLLFYLEGKQLERSLTLYQAILQQQ
MKEHEIVIGSKLWSKVYTLTYRKAVGQEGAHNEGVDSAESSTVSDKVGVYTLYTSLFSNM
FPCELASDLEKSNPTYDIVYLLKSLESMNKFIFHLLSRQRICAFAEGKINDLDAFQIAVT
PVPQNEFLSSKLTEKLEQQMRDGLAVSVGGMPLWCNQLMASCPFLFSFEVKCKYFRLAAF
VPLLGQPPSPSHSDSGMTSDRRQSSGGLPRQKFLVFRNRILDSAAQMMELHACQKVLLEV
EYDEEVGTGLGPTLEFYTLVSHEFQKSGLGMWREDGGSFTSGTSHAEDTGILISPCGLFP
RPWSSTMDASDGTQFSEVIKKFALLGKIVGKALQDGRVLDLHFSKAFYKLILGQDLGLYD
IQSFDPVLGRTLLEFKALVERKRFLESVHGENTTFEFDSCFRETRIEDLCLDFTLPGYPD
FVLASGFDHKMVNSTNLEDYVSLMADATINSGISRQVEAFKSGFNQVFPIEHLQIFTEEE
LERLLCGERDSWAFNELLDHIKFDHGYTASSPPIVNLLEIIHEFDQEKRRAFLQFVTGAP
RLPPGGFASLNPKLTIVRKHSSNSADLDLPSVMTCANYLKLPPYSLKEMMKEKLVYAIKE
GQGSFHLS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtcgtggccaaaagcggtctgagattgatgatgaattgccggccgataagagg
gcctgtagttctttggagtttagaccgagtacatccagctcgtctcaaacccctatcaac
tctgtgagctccacgcccgaacgcaatgatcagaacattcatgatcatgctgatcatatg
gatactgaatccgaaggaggagagcctgagaaggattcggcgtatgattcttgtgatgag
gatgaggaagatcagagacacagtgatcttagggactatcagaggcggagagcatccggt
gatcatggaaggtttcagaccataatatcatctctgagtgaagaagtcgatctttctcag
cacctggttatgctcaccgagttatgcgaagtgttatctttttgtacagaggattcactg
tcaggcgatacatcgaactcattgtcaccgattcttgttaagctgtcaagggatgagact
agtgcggatatcatgctattggctataagggcaatgacttatttatgtgatgtatatccg
aaatcatcagtgtacttggtccgacatgatgcagttcctgctctttgccagagacttttg
gctattgagtatttggatgtagctgagcaatgtctacaagcattggagaagttgtcacgg
gagcaaccacttgcatgcttacaggctggagcaataatggctgttctgaattatatagac
ttcttctctacaagcatacagagagttgccctttctactgtggtgaacatttgtaagaaa
cttccttctgaaggtccttcacctttcatggatgctgttcctacattgtgcaaccttctt
cagtatgaggatccacagcttgtcgaaaatgttgctatttgcttgattagaattacagag
cgagtgagtcagtcttctgagatgctggatgaactttgtaagcatgggctgattcgtcaa
gccacacattttatgagcttaaatagccgaactactctgtcccaaccaattcataatggt
ttgatagggctacttgtcaaactttcttccggttcagttgtagccttcaggactctatat
gagcttaatatgagcagcatattaaaggatatattatccacttatgacctctcacatgga
atgtcctctactcatgttgtggatgggcattgctatcaggtatatgaagttctgaagtta
ctaaatgagcttctcccaacttcagccagagatcaagatgctccacagttgtcagagaaa
gaatcttttttaataaatcggcctgaacttctggaaaagtttgggagggatatacttccg
tctctgatacaggttgtaaattccggtgccaatttatatatttgctatggatgcttgtca
gtcatcaacaagttaatttatttgagcacatctgacatgctcgttgaactgcttaagaat
gccaacatttcaagttttctggctggagtctttactcgaaaggatcctcatgtgttggta
tcaaccctacagattgctgagttaatcctgcaaaagttctctgataatttcttggactca
tttattaaagaaggtgtcttttttgccattgatgctttgctaacccctgaaaaaagctca
ctagtaacactgaacaaatgttcgaagctggtgtttccagtgtctagtggaacaaggctg
ctgtctgactctagtcagaagtctgcttcaaaagaggtcctgagatgcttatgctatgct
tttcctagcagttccccatcagggtcagaaaaaggaagttgcatgcttgaaaaggattct
gtttatagtcttgcaaagcatgttagaaccaagtactttgcaccagaattatgtgaccct
gataaatcattaactgatgttcttcagaagcttagaactttttctgcttcattaagtgat
ttgatgaacatgtccttggatacttgtgctcctaatcagcatgaagagagcttctatggt
ataatgcatcaagtaatggaaaagcttggcggaagagaacccatttccacttttgaattg
attgaaagtggaattctgaagtccttgatgacttacttgtccaatgaccggtatttgaga
cagaagggtgatcttgtagctgctaaaggtgatatctatgctgtagaaaaaagatttgag
gtgttcgcaaggctattattttctttgccagatccgttctctggtgacctgcccattgta
acattgatacggagattacaaagctcactatctactttggaaaatttccccgttatcttg
agccatatacccaagcagaggaactcatatgctacagttccatatgagcgatacactgca
tatccatgtatgagagctcgttttgttagagacaaggaagagactacccttggtgattgc
tgtgaagatgttttgaccgttgaccctttttcttcattggatgccattgaaggatatgtg
tggcctaaagtcaatgcaaaaggaaccagccgcatcaaatcagctacaattgagggtcaa
tcagaatgcacaccatcaaatgccagctctagtcaaggagggtgtccaaatactggtgag
cctgagagcatgtcggcagacttgcctgagttgaaggcagatgaggtcaatttaacacag
ccggaacctgaacaagaaccaagttttggacagacaaatcctggaacatctttagatgaa
acttatactgatactgtggagaaagaagtagaagctcaatctgaggaagacacacagatg
gaagaacagtgtcctttatcttgtagcagtgaagatgcttcaccgaaattgttgttttac
cttgaagggaaacagctggaacggtcattgacattgtatcaagcaattcttcaacaacaa
atgaaagaacatgaaattgtcattggttcaaaactgtggagtaaagtatacacactgaca
tatagaaaagctgtaggtcaagaaggtgctcataatgaaggtgttgactcggcagagagt
tccactgtatcagataaagttggggtgtatacgttgtatacttcacttttctccaacatg
tttccttgtgagcttgcttctgacttggagaagtcgaatcctacctatgacattgtatat
ctgctcaaaagcttggaaagtatgaacaagtttatttttcatctgttgtctcgtcaaaga
atatgtgcttttgctgaagggaaaatcaatgacttggatgcatttcagatagcagttaca
ccagtgccacagaatgagtttttgagcagtaaactgaccgaaaaactagaacagcagatg
cgggatggtttggctgtgtccgttggtggtatgcccctgtggtgtaatcaattaatggca
tcatgtccttttttgtttagttttgaggtcaaatgcaagtatttccgcttggcagccttt
gttccactactaggtcagcctccttcaccgtctcacagtgattcaggtatgacgagtgac
aggcgacaaagctctggtggcttacctcgacaaaagtttttagttttccgcaaccgcatt
ctggattctgctgcccaaatgatggagctgcatgcctgtcagaaggtacttcttgaggtg
gaatatgatgaagaagttggtactggtcttggtccaacattggaattttataccctggtt
agtcatgagtttcagaaatctggcctgggcatgtggagagaggatggtggatcttttacc
tctggtacaagccatgctgaggatactggaattttgataagtccttgtggtctctttcct
cgtccgtggtcatctactatggatgcatcagatgggacacagttcagtgaagtaatcaag
aagtttgcgcttttggggaaaattgtagggaaagcgcttcaggatgggagggtcttggat
ctgcatttctccaaagccttttataaactaattcttggacaggaccttggtctgtatgac
atccagtcatttgatcctgtgcttggaaggacactactagagttcaaggctcttgtggaa
aggaaaaggtttttggaatctgtacatggagaaaatacaacatttgagtttgactcgtgc
ttcagggaaactagaattgaggatctttgccttgattttacacttcctgggtatcctgat
tttgtccttgcatccgggtttgatcataaaatggtaaattccacgaacttggaagattat
gtttcacttatggcagatgcaactataaattctggaatttccagacaagtggaagctttc
aagtctggttttaaccaggtgttccctattgagcatcttcagattttcactgaagaagaa
ctggagcgtctactatgtggagaacgtgattcttgggctttcaatgagctccttgatcat
atcaaatttgaccatggttacactgctagcagtcctcccattgttaatttgctggaaatc
atacatgagtttgaccaagaaaagcgaagagcgtttctgcaatttgtgactggggcacct
cgcttacctccagggggttttgcatccctcaatccgaagttaactattgttcgaaagcac
tctagcaactcggcggacttggacctaccaagtgtgatgacttgtgcaaactatcttaag
ctgccaccatactctttgaaagagatgatgaaggagaagctcgtgtatgccattaaagaa
gggcagggatcattccacctttcatag
DBGET
integrated database retrieval system
