Rosa chinensis (China rose): 112193642
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Entry
112193642 CDS
T06020
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112193642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112193642
03009 Ribosome biogenesis [BR:
rcn03009
]
112193642
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112193642
Spliceosome [BR:
rcn03041
]
Complex A
U2 snRNP components
U2 related factors
112193642
Complex B
112193642
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112193642
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
90S particles
Helicases
112193642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
AAA_7
T2SSE
Flavi_DEAD
AAA_30
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
112193642
NCBI-ProteinID:
XP_024189622
LinkDB
All DBs
Position
3:complement(34232490..34236729)
Genome browser
AA seq
729 aa
AA seq
DB search
MGTERKRKVSLFDVVDETTVAAAKMSKSNGGGGAMNHNNPMSSLINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFFQVLKKSQSLILVGETGSGKTTQIPQFVLEAVDRESSDKSRKMI
ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD
PLLERYSVIILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFNGAP
LMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRKI
NKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFDAAPPPATEGGPAGRKIVVSTNIAETSL
TIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEK
SFHNDLVPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGA
LDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQK
AADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRIM
ARFNLKLCSTDFKSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLD
HKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLEKLYRKRD
DKEDNRNRK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcttgttcgacgtggtggacgagaccacggtt
gcagctgcgaagatgagcaaatcgaacggtggtggaggcgccatgaatcacaacaacccg
atgagcagtctgatcaataggtggaccggaaagccctactcgcaaaggtactatgagatc
ctcgagaagaggaagactttgcctgtttggcaccagaaggaggagttctttcaggttctc
aagaaaagtcagtcgctgattctggttggtgagaccggtagtggtaaaaccactcagatt
cctcaatttgttttggaagctgttgatagggagtcttcagataaaagcaggaagatgatt
gcatgtacccagcctcgtagggtggctgcaatgtcagtgtctcgccgtgttgctgaagag
atggatgttaccattggggaagaggttggttacagcattcgttttgaagactgcagcagt
gccagaacagtattgaagtatctaacagatggtatgcttttaagagaagccatgacagat
ccactgttagaacgatacagtgtaataattcttgatgaggctcatgagaggactttagca
acagatgttctgtttgggcttctgaaggaagtattgaaaaatagacctgatatgaagctg
gttgttatgagtgctacacttgaggctgagaagtttcagggttatttcaacggtgcacca
ctaatgaaggttcctggcaggcttcatccagttgaaattttttacactgaggaacctgag
agggactacctggaggcagcaattcgaactgttgtacagattcatatgtatgagactcca
ggagatatacttgtttttttaactggagaagaggagatagaagatgcatgccgcaaaatc
aacaaagaaatttcaaacctgggtgatcaggttggtccagtgaaagtggtgcccctgtat
tcaactctccctccagctatgcagcagaaaatatttgacgctgctcctcctcccgcaaca
gaaggcggtcctgcaggaaggaaaattgtggtgtcaactaacattgcagaaacttctctg
accatagatgggatcgtgtatgttattgatccaggtttttctaaacagaaagtttataac
ccacgagtgcgtgttgaatccttgttggtatctccgatttctaaggctagtgcacatcag
aggtcagggcgtgctggaagaactcagccaggcaaatgtttcagactatatactgagaaa
agtttccataatgatcttgtacctcagacatatccagaaatattgagatcaaatcttgca
aatacagtgcttactttgaagaaactaggaatagatgatttggttcattttgattttatg
gatccccctgctccagagacattaatgagagcactcgaagttttgaattatttgggtgca
ttggatgatgatggtaacttgaccaagctgggtgagattatgagcgagttccctctagat
cctcagatgtcaaagatgcttgttgttagccccgagtttaactgctcaaatgagattttg
tcgatttctgccatgctttcagtacccaattgctttgtccggcctagggaggctcagaaa
gctgcagatgaagcaaaagctaggtttggacacatcgatggagatcatctcacactgctg
aatgtgtatcatgcatacaagcaaaacaatgaagatccatcgtggtgctatgagaacttt
gtcaatcagagggcattgaagtctgcagacaatgttagacaacagctagtgcgcattatg
gctcggtttaatctcaagctatgcagtactgattttaagagtcgggactactacatcaac
atcagaaaggctatgctagctgggtatttcatgcaggtggctcatcttgaacgcactggt
cactaccttactgtgaaggataaccaagttgtacatttgcatccatcaaattgcttggat
cacaagccagagtgggtgatttacaatgagtacgtcttaacgagcaggaattttatccgc
acagtgacagatatccgtggtgaatggctagttgatatcgcaccacactactatgatttg
gccaactttccccagtgtgaggccaagcgagttcttgagaagctttacaggaagcgggac
gacaaggaggataacagaaacagaaaatga
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