Rosa chinensis (China rose): 112193756
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Entry
112193756 CDS
T06020
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112193756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112193756
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112193756
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112193756
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112193756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
112193756
NCBI-ProteinID:
XP_024189755
LinkDB
All DBs
Position
3:17983224..17990569
Genome browser
AA seq
1112 aa
AA seq
DB search
MDMESSRRPFGRSNEPGLKKARLNDDQGVLNPNLNGRGFGQRPGGANPALQRFRVSDRES
VEGNDPRGGGAYVPQPVQHQELVSQYRTALAELTFNSKPIITNLTIIAGENVNAAKAVTA
TICANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPPIHQSMR
HLFGTWKGVFPAQTLQMIEKELGFGTTANGSSSGVTTSRPDSQSQRPAHSIHVNPKYLER
QRLQQPTRTKGMASDLDGTMTNSIDDLDRPDRVASISAGRSWVDPPVKMPNIQRSTRDAL
SERFHEKNVGGEYDDFDYDSDLRRSSTLGIGRSGGNIIEQGHDKPWYGGGSSVAETISSQ
RNGFNKKHGLNYSAPKSLNADPRLQTPQAIANRNRGGLSSSWKNSEEEEYMWDDVNSRST
DHITPDLSSNSRKERWISDDSEKLGFVGGSRKLKRVNDLDLAADIGDQKDLAALGHRMPS
PWSLQESHVVDRLTSPGAPVISSVHSERYVSSLSGLSTSGDSSVARLGNRAQMMSSRIGA
SSFGLPTNAATGSNGAVGKQQQSLRAASPSGQLLMHQHSPSPTSKIQHPRNYLAEQDPAH
APSLPPDLKVSEILGKSDLGLHSQYTEDSLPIPTSNVRLGGMAKSQAQDLKALSSSVAAI
QSRHHYPFRQQQDSTEPESLDQTQKPHVPHVATSIMPSTVRNSVSDLSNLLAAETSGQSS
TSSLLAAVLKTGILSNKSITGSLPNLNFGDKEKMPPESGGPPPLPIGRPPTKVALPGSKV
AAAAPSLGHPSRENSPTTSSTLQKVAHPPLPPGQPPLSLEGSSTAKDPNVVKNAKDPISN
LLSSLVAKGLISASKSESPTLLPSQKPIEVQSQNLSTTTTTTVSPVSASSKVPVSSEMDD
VSLTEQVAKPSDALAQSTKTEKRNLIGFEFKPDKIRELHPSVIDELFEDLPHKCSICGLR
LKLKERLDRHLEWHTLKTPEADGSITASRGWYANSTNWVTGKAGSSSELDSNNSNDMTVK
TVISNEPMVPADESQCACVICGNTFEDFYCQESDDWMFKGAVYMTVPSGDGEFGTAEGSV
LKGPIVHANCMDENSLEDLGLVATRIKLEKDV
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggatatggagagctcgcgtaggccgtttggcagatcgaacgaaccagggttgaagaag
gcgagattgaacgacgaccaaggtgttttgaatccgaatctgaacggccgaggcttcgga
caaaggcccggcggagctaatccggcgcttcagaggttcagggtgagtgatagagagtcg
gtggagggcaatgaccctcgcggcggcggagcctatgtgccgcagccagtgcagcaccag
gagctcgtgagccagtaccggacggcgctggcggagctgacgttcaattcgaagccaatc
atcaccaatttgaccataatcgctggggagaacgtcaacgctgcgaaggccgtcactgcc
actatatgcgccaacattattgaggttcctagcgagcagaagttaccatcgctttatctt
ttggacagtattgtaaagaatattggaagggattacataaaatactttgctgccagacta
cctgaggtattctgcaaggcatatagacaggttgaaccccctatacatcaaagcatgcgt
catctttttggaacttggaaaggtgtcttccctgctcagacacttcagatgattgagaaa
gaacttgggtttggtactacagcaaatggttcgtcctctggagttacaacatctagacca
gactcacagtcacaacgtccagcacatagcattcatgtgaaccccaagtatttggaaagg
cagcgtcttcagcaaccaaccaggacaaaagggatggctagtgatttagatgggactatg
acaaactcgattgatgatttagacaggccggacagagtagcaagtatcagtgctggacga
tcgtgggttgatcctcctgttaaaatgcctaatattcagcgttcaactagagatgcacta
agtgagcgttttcatgagaagaacgttggtggcgaatatgacgactttgattatgattct
gatcttcgaaggagttcaaccttgggcattggacgatctggtgggaatattatcgagcaa
ggacatgataaaccttggtatggaggtggaagcagtgttgccgaaacaatttccagccaa
agaaatggttttaacaagaagcatggattaaattactcagcacctaaatcattaaatgct
gatcctcgtttacagacaccacaagccattgcaaatagaaacaggggtgggttgtctagt
agttggaagaattctgaggaagaggaatacatgtgggatgatgtgaactcaagatcaaca
gatcacataacccctgatctttctagtaattcaagaaaagagcgctggatttctgatgat
tcagagaaattggggtttgttggtggctctcgtaaactgaaaagagtaaatgatttggac
ttggctgctgatatcggtgatcagaaagatttagctgctctcgggcaccgtatgccatca
ccttggtcattgcaagagtcacatgttgtggatcggctgacctctcctggtgctcctgtc
attagttcagttcattcagagcgttatgtttcaagtttaagtgggttatcgacaagtgga
gactcttctgtggcaagattgggaaatagagcacagatgatgtcttctcgtattggggcc
tcaagctttgggttgccaacaaatgctgcaacagggtctaatggagctgtagggaaacag
cagcagtctctgagagctgcatcaccatctggacagttgctgatgcaccagcattctccc
tcacctacatcaaaaatacagcatccccgtaattatttggctgagcaagaccctgctcat
gctccatcccttcctcctgatttaaaagtatctgaaattttgggaaaatcggacttaggg
ttgcatagccagtatactgaggactctttgcctattccaacgtccaatgttcgattaggt
ggcatggcgaaatcacaggctcaagatttgaaggctttgtcttcctcagtggctgccatc
caatcaaggcaccactatcccttccgacaacaacaagacagtacagagcctgaatccttg
gatcagactcagaagccccatgtacctcacgttgctacttctataatgccctcaacagtt
agaaattctgtatcagatctttctaatctccttgctgcagaaacttcaggacagtcaagc
acaagtagtttgttggctgctgttttgaagaccggaattctctctaataaatcaattact
ggtagcctgcccaatttgaattttggtgacaaggaaaaaatgccaccagagtcaggtggt
ccgccccccttgccaattggacggccgcctaccaaagttgcacttccagggtccaaagtt
gcagcagcagcaccttcattaggtcatccttcccgtgagaactcgccgaccacctcaagt
actctgcagaaggttgcacatccacctcttccacctggccaaccacctttgtctctagag
ggtagctcaacagcaaaagatccaaatgtggtgaaaaatgccaaggatccaatatcaaac
cttttgagctctttagttgccaaggggttgatatctgcatcaaagtcagagtcacctact
cttctgccatctcaaaagccgatagaggtgcaaagccagaacctatccacgactaccacc
actactgtctctccagtttcagcatcatcaaaagttcctgtttcatctgaaatggatgat
gtgtctctcacagaacaggtggctaaaccctctgatgccttggctcaatctactaagaca
gaaaaaagaaacctaataggatttgagtttaagccagataaaatccgagaattacatcca
tctgtcatcgatgagctttttgaggaccttccacataaatgtagcatatgtggcctcagg
ctcaaacttaaagaacgtcttgataggcacttggaatggcatactttgaaaactcccgaa
gcagatggttccattacggcatcaagggggtggtatgcaaattcaaccaactgggttact
ggaaaggcaggaagttcttctgaacttgactccaacaattcaaacgacatgactgtcaag
acagtgatcagtaatgagcccatggttccagctgacgaaagccaatgtgcgtgtgttata
tgtggtaatacgtttgaagacttctattgtcaagaaagtgatgactggatgttcaaagga
gctgtgtatatgactgttccatctggggatggtgagtttggaactgcagaggggagcgtt
ctgaagggtcccattgtgcatgcaaattgtatggatgaaaattcacttgaggatttggga
ctggttgctacccgaattaaattggaaaaggatgtttag
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