| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts UPF2
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| KO |
| K14327 | regulator of nonsense transcripts 2 |
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| Organism |
rcn Rosa chinensis (China rose)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:rcn00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112193917
03015 mRNA surveillance pathway
112193917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:rcn03019]
112193917
Messenger RNA biogenesis [BR:rcn03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112193917
mRNA cycle factors
P-body specific factors
112193917
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
3:complement(28889702..28900434)
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| AA seq |
1191 aa
MAVNTSSEMDHNEEESGGGAGAEPHGKQDDEEAVARLEEMKKSIESKMALRQSNLNPERP
DSGFLRTLDSSIKRNTAVIKKLKQINEEQREGLMDDLRSVNLSKFVSEAVTAICDAKLRS
SDIQAAVQICSLLHQRYKDFSPTLVQGLLKVFFPGKSGDDPDADRNLRAMKKRSTLKLLL
ELYFVGVIEDGGIFVNIIKDLTSGEHLKDRDTTQTNLTLLASFARQGRMFLGLPLSGPEI
HEEFFKGLNITPDQKKFFKKAFQAYYEAAAELLQSEHTSLRQMEHENARILNAKGELSDD
SASSYEKLRKSYDHLYRNVSALAEALDMQPPVMPEDGHTTRVTSGEDASSPAAGKDSSVL
EAIWDDEDTRAFYECLPDLRAFVPAVLLGEAESKVNEQSAKTQEQPTEPAPELDQSQQAT
EDAAESSADVGALQEGKIREKGKEKEEKDKDKIKDADKEKGDKKGENEKEKLKSIEGTNL
DALLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRSVFNVPRTSLELLPYYSRMVATL
STCMKDVSSMLLAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLK
ACLDDFSHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVE
NAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTLEHVLRQLRKLPWGECEPYLLK
CFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRLGLELNEYGMQQRRIAH
MRFLGELYNYEHVDSSVIFETLYLILIFGHGTTEQDVLDPPEDCFRIRMVITLLETCGHY
FDRGSSKRKLDRFLMHFQRYILSKGVLPLDVEFDLQDLFAELRPNMTRYSSLEEVNAALV
ELEEHSEKANNEKHSDTEKSSRRTTSNKMSVNEQGVANGTEGNGAVHEDHRDSDSDSGSG
TVDPDRHEEELDEENHDDGSESEEEDDDGGGPASDEEDEVHVRQKVAEVDPQEEADFELD
LKAVMQESMEQRRQELRGRPTLNMMIPMNVFEGSIKDHHGRVGGDSGDEGDEESGGSKDV
QVKVLVKRGNKQQTKQMYIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNG
LGNQTMNYAQSGGNRFAGRGSTWEGTSSRGGGPRRYHSSYSGAGVYYSRRK |
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| NT seq |
3576 nt +upstreamnt +downstreamnt
atggcagtcaatacgagtagtgagatggatcacaatgaggaggaatccggtggtggtgcc
ggagctgaacctcatgggaagcaagatgatgaggaagccgttgctcggcttgaggaaatg
aagaaatcaatcgagtcaaagatggctctccgtcaaagcaatttgaaccccgagaggcct
gactcgggatttctgaggacattggattccagcattaaacgcaacacagcagttattaaa
aaactgaagcagataaatgaagagcagcgggaagggctgatggatgacttgagaagtgtc
aaccttagcaaatttgtcagtgaagctgttactgctatttgtgacgccaaacttagatcg
tcggacatacaagcagcagttcagatctgctctctgcttcatcaaagatacaaagacttc
tccccgaccctagttcaaggtcttttgaaagtcttctttcctggaaagtctggggatgac
ccagatgcagataggaacctgagagccatgaagaagcgtagcactttgaaactccttttg
gaactttactttgttggagttatagaagatggtggtatttttgtgaatattattaaagat
cttaccagtggagaacacttaaaggaccgggatactactcagacaaatttgactcttctt
gctagttttgctcggcagggaagaatgtttcttggtcttccactctctgggccagaaata
catgaagagttttttaagggccttaatatcacaccagatcaaaagaagttcttcaagaag
gcatttcaagcatattatgaagctgcagctgaactgcttcagtctgagcatacttcactt
cgccaaatggagcatgaaaatgcaagaatccttaatgctaaaggagagctcagtgatgat
agtgcctcttcatatgaaaagctgcggaaatcttatgaccatttgtaccgcaatgtctca
gctttagcagaagcacttgatatgcagcctccagtaatgccagaggatggtcacacaact
agggttactagcggagaggatgcttcatctccagctgctggaaaagattcttctgtactt
gaagccatatgggacgatgaagatactagggctttctatgaatgtttgccagatcttaga
gcatttgttccagctgtgttactgggagaagcagagtctaaagtcaatgagcaatctgca
aagacccaagagcaaccaactgaacctgcgcctgaattagaccagagtcaacaggctaca
gaagatgctgcggaatcatctgcagatgttggtgctttacaagaaggaaaaatcagagag
aaaggaaaggagaaggaagaaaaagataaagacaagattaaagatgcagacaaagagaag
ggtgacaagaagggagagaatgaaaaggagaaactaaaaagtatcgaagggacgaatttg
gatgctttactgcagaggctccctggttgtgtgagccgtgacctcattgaccaattgact
gtagagttttgttacctaaattctaaagcaaatcggaaaaaacttgtgaggtcagtgttt
aatgtccccaggacatcgttggagttactgccgtactactcacgcatggttgccactctg
tcgacttgtatgaaggatgtatcttccatgctcctggctatgttggaggaggagttcaat
ttcttaataaataaaaaggatcaaatgaacattgaaacaaagattaggaatattagattt
attggagaactctgcaagttcagaattgcaccagctggtcttgtgtttagttgtttaaag
gcttgtctagatgatttttctcatcataatattgatgttgcttgcaatcttcttgagact
tgtggccgttttctgtatcgctctcctgaaactactgtgcggatggctaacatgttggaa
atattaatgcgcttaaagaatgtaaaaaatttggatcctcggcacagcacccttgttgaa
aatgcttattacctgtgcaaaccgcctgagagatccgcacgagttgctaaagtccgtcct
ccattgcatcagtatataagaaagttgctattctcagatcttgataaatctacccttgag
catgtgctgaggcaattgcgtaaactaccatggggtgaatgtgagccatatcttttgaaa
tgctttatgaaggttcacaaagggaagtacggtcagatccatttgattgcttctctcact
gctggcctgagtcgctatcatgatgaatttgctgtctctgttgttgacgaggttttagag
gagatccggcttggccttgaattaaatgagtacggaatgcagcaaagacgaattgcccat
atgcgattcctaggagagttatacaactatgaacatgtagattcttctgttatatttgag
actctatacttgattctcatctttggccatggcacaacagagcaagatgtattagatcca
ccagaagattgtttccgcataaggatggttattactcttctcgaaacttgtggacattac
tttgaccgaggctcttctaagaggaaacttgatcgcttcttgatgcactttcagagatat
atactaagcaaaggtgtactaccactagatgttgagtttgacttacaggacttatttgca
gaattgcgtcccaatatgactcgatactcatcccttgaagaagttaatgcagctctggta
gagcttgaggagcactcggagaaggccaataatgagaagcactcagacactgaaaagtct
tcaaggaggacaacctccaataaaatgtcagtgaatgaacagggtgttgcgaatggtaca
gagggaaatggggcggtgcatgaagaccatagagatagtgacagtgattcaggaagtggc
actgttgatccagacagacatgaagaagaattggatgaagagaatcatgatgatggatca
gagagtgaagaggaggatgatgatgggggtggacctgcttctgacgaggaggatgaagtc
catgtcagacagaaggttgcagaggtggatcctcaggaagaagcagattttgagctggat
ctcaaggctgttatgcaggaaagcatggagcaacgaaggcaagagctgcgcggtcggcct
acattgaatatgatgataccaatgaatgtgtttgaggggtccatcaaggaccatcatgga
cgtgttggaggggacagtggtgatgagggggatgaggagtctggaggaagcaaggatgtc
caagtcaaagttctcgtgaagcgtggtaacaagcaacaaacaaaacagatgtacatccct
cgtgattgctcccttatacagagcacaaaacagaaagaagcggcagagcttgaagagaaa
caagacatcaagaggctagtcttggaatataatgatagagaagaggaggaacttaatgga
ttagggaaccagactatgaactatgcgcagagtggtggcaatagatttgctggtcgtggc
agcacttgggaaggaactagcagcagaggtggtggaccacgtcgatatcacagtagttat
tctggtgctggagtttattacagcaggaggaagtga |
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