Rosa chinensis (China rose): 112194427
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Entry
112194427 CDS
T06020
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112194427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112194427
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112194427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_WDR41
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_SCAP
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_Nup120_160
WD40_like
Motif
Other DBs
NCBI-GeneID:
112194427
NCBI-ProteinID:
XP_040372968
LinkDB
All DBs
Position
3:30840275..30851493
Genome browser
AA seq
370 aa
AA seq
DB search
MKSRSLTTKIKERKIMFSITVLDIEEESFKRTIGYCSRRGRGFTEATRPKALRDTRVHIA
QYSLPRAALRLQRVRRKEEDPDEDMDAEINWALEQASNLKLDCSEIGDDRPLSGCSFSQD
GKLLAACALSPIAKLWSMPQVTKVATLKGHTERLTDVAFSPVQNHLLATASADRTARLWN
SEGAHLMTFGGHLDRLARIAFHPSGKYLDFHPDGSLVATAGLDALARVWDLRSGRSILTL
EGHVKKVLALSFSPNGYYLAPGGEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGY
FLVTGSYDMTAKIWSARDFKPVKTLSGHGSKVTSLDVSGDGHHIATVSHDRTIKLWSSST
NEKDQEMDVD
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcagaagcttgaccaccaagatcaaggaaaggaagattatgttcagcataaca
gtgctcgacattgaggaggagagctttaagcgaaccataggttattgctcacgacgagga
cgaggcttcactgaagcgaccaggcccaaagctttgcgtgacactagggttcatattgcg
cagtactcgcttcccagggcggcgttgcggcttcaacgtgtgaggaggaaggaggaggat
ccggatgaggatatggatgccgaaatcaactgggctttagagcaggcctccaatttgaag
cttgattgcagtgagattggggatgataggccactttctggttgctcattctcacaagat
ggcaaattgcttgccgcatgcgctctaagtccaattgccaagctgtggagcatgcctcaa
gtaacaaaggttgccaccttgaagggacatacagagcgcttaaccgatgttgcattttct
cctgtgcaaaatcatctcttggcaactgcgtctgcggataggactgcgaggttgtggaac
agcgaaggagcacacctaatgacattcgggggacatttggaccgtcttgcccgcattgcc
ttccatccctcaggaaagtacttggacttccacccagatggctcattggttgcaactgct
ggattggatgcgcttgctcgtgtttgggacctccgtagtggtagaagtattcttaccttg
gaaggccatgtcaaaaaagttcttgcactcagtttttcaccaaatggttattatctagcc
cctgggggtgaagacaacacttgtaggatatgggatttaaggaaaaagaaatccatatac
attattccagcacactccaatctcatatcacaggtcaaatttgaacctcaagagggatat
ttcttggtaactggctcctatgatatgacagcaaagatatggtcagcccgagattttaag
cctgtcaagacgctctctggacacggatcaaaagttacttccttggatgtttctggtgat
ggacatcacattgctactgtatcacatgaccgaactatcaaactatggtcgagcagtacc
aatgagaaggaccaggaaatggatgttgattag
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