KEGG   Rosa chinensis (China rose): 112194461
Entry
112194461         CDS       T06020                                 
Name
(RefSeq) flowering time control protein FY
  KO
K15542  polyadenylation factor subunit 2
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112194461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcn03019]
    112194461
Messenger RNA biogenesis [BR:rcn03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     112194461
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR3_2nd WDR55 WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 NBCH_WD40 eIF2A WD40_MABP1-WDR62_1st PROPPIN Beta-prop_RIG_1st Beta-prop_Vps41 WD40_like WDR54
Other DBs
NCBI-GeneID: 112194461
NCBI-ProteinID: XP_024190467
LinkDB
Position
3:33133629..33134852
AA seq 407 aa
MAHHHRPYAQTTVDYTGSVVRHTQNRKWSSSDPLPAAACSSINNNPFAAQFVHSCTNYRA
RASSINRVLWTASGRRLITGSQNGEFTLWNGHSFNHELRIQAHDHAIRSMAWSFGDEDWI
SGDDGGTIRYWKSNMSNVLVNESAHHESVRDLSFCRSNLKFCSCSDDTTVKIWDFERCQQ
EQTLTGHGWNVKSVDWHPTNSLIASGGKDSVVKLWDARSRRELCSFYDHKNWVHSVKWNR
NGNWLLTASKDHVIKLYDLRAMKELKSFRGHQNQVTALAWHPLTEDYFVSGSSDGSIFHW
LVGHVTPQVEIPSAHSNSYNNSVWDLQWHPIGHMICSGSNDRTTKFWCRTGDKSKISQNQ
SNSAFACHMNSNFPFPYDGPPTIATRDQGTIGSGGVGTIIPGVGIAV
NT seq 1224 nt   +upstreamnt  +downstreamnt
atggcccatcaccaccgcccctacgcccagaccacagttgattacaccggctctgtcgtc
cgacacacacagaatcgaaagtggtcctcctcagatccgttgccggcggctgcctgttct
tcgatcaacaacaacccatttgctgcccagtttgtgcactcttgtacaaattacagagcc
cgtgcttcttcgatcaatcgagttttatggacagcttctgggaggcgtcttattacaggc
tctcaaaacggggagttcactctttggaatggtcactcattcaaccatgaattgaggatt
caggctcatgatcacgcaatcaggtccatggcgtggagttttggtgatgaagattggatc
tctggtgatgatggaggcacaatcaggtattggaagagtaacatgagtaatgtgctagtc
aatgaatctgctcaccatgaatcggttcgggacttgagcttctgtcggagtaatttgaag
ttctgttcatgttccgatgatactactgttaaaatctgggattttgaacggtgccaacaa
gagcagacattgaccggccatggttggaatgtcaagagcgttgactggcaccccacaaac
tctctaatagcttcgggtgggaaagacagtgttgtcaaactgtgggatgctaggtcgcgc
agagaactttgttcgttttatgatcacaaaaattgggtgcattctgtcaagtggaaccga
aatggtaactggctgctcactgcttccaaggatcatgtcattaagctttacgacttgagg
gctatgaaggaactcaaatctttccgcggccatcagaaccaagtgactgctctagcttgg
catcctcttactgaagactattttgtcagtgggagtagtgatggatccattttccattgg
cttgttgggcatgtaactccccaggttgaaattcctagtgcacacagtaacagttacaat
aatagtgtgtgggatctccagtggcatcctattggtcatatgatttgtagtggtagcaat
gatcgcaccaccaagttttggtgcagaacaggagataaatctaaaatcagtcagaatcaa
agtaattctgcttttgcttgtcacatgaacagtaattttccttttccatatgatggacca
ccaactattgctactcgagaccaaggaaccattggttcaggaggtgttggaaccattata
ccaggtgttggaattgcggtttaa

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