Rosa chinensis (China rose): 112194655
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Entry
112194655 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112194655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112194655
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
112194655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
RRP7
Motif
Other DBs
NCBI-GeneID:
112194655
NCBI-ProteinID:
XP_024190640
LinkDB
All DBs
Position
3:complement(47058557..47067070)
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AA seq
848 aa
AA seq
DB search
MSHEPTPPPPARAQLLQNLATATANLSGSSRVIPSGEDFYYYRNFDEFKLPIEEIAKQSQ
SMLESIGSSASLGMAFPKDLDLEDAYDWLVNVNDEVLERVDASVDEFKRSRNKEKEDDEG
FQLVCGKKKKGDQTLSKDNKTSKPKVSFHVPSIRKPQEEFNILVNNSNQPFEHVWLGTGD
DGHRFLHPLEKLSILDFIDDDIGGVEPVKPPEIEATPFKLVEEVKDLKELAAKLRGVNEF
AVDLEHNQYRSFQGLTCLMQISTRTEDFILDTLKLRIHIGPYLREVFKDPSKRKVMHGAD
RDIVWLQRDFGIYICNLFDTGQASRVLKLERNSLEYLLHHFCDVSANKEYQNADWRFRPL
TKEMVRYAREDTHYLLHIYDLMRAKLSSMPKESENSDAPLVEVYRRSYDICMHLYAKEVF
TENSYLHIYGLQGACFNSQQLAVVSGLYEWRDVVARTEDESTGYILPNKTLLELAKQMPD
TTNKLRRLVKSKHSYIEQHLSSVVSVIRHSMQNAAXFEAAAEHLKVGRVEMASEENVLVS
DRSEPLPDESGCNLINGDVSAPSPAAPPHKEDFREHGCGASNGEGNVGFEVHPRDNIVTG
KSRKGSSIGCSLESAKVTGATVQVQKKPSRAFSALLGTAVPKRKFDAGVKDKEDNKLEQI
RSSVNFPFHSFSGGMEQSNPKIEEPGKGSENPHSEMPVTVSPTRRSLGDIITLENDSHVP
EHKEDNSVASALGMDGEDDPMSLSELSSSFKKCFPPPNQNRKARELEKSQESGGLQVKPF
DYEAARRQVIFGEKTAKDARAGGEGMKSLGSRAKKKTLVDGDDGSKELPQGRRRQAFPAT
GNRSATFR
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgagccatgagccgactccgccaccgccggcgagggcccaattgctccaaaacctagcg
acagccacagccaacctgtctggctcctcgcgagtcataccttcgggagaggacttctac
tactaccgcaatttcgacgaattcaaactgccaatcgaagaaattgcaaagcaatctcag
tccatgctcgaatcgattgggtcgtcggcaagcctcgggatggctttccccaaggatttg
gatttggaggacgcctacgattggctggtcaatgtgaacgacgaggtcctcgagagggtg
gacgcgtcggtggacgagtttaagaggagcaggaacaaggagaaggaagacgacgagggg
ttccagttggtgtgtgggaagaagaagaagggggatcagaccttgtccaaggacaacaag
actagcaagcccaaggtctcgtttcatgttccctccattcgcaagcctcaggaggagttt
aacattctcgttaacaattcaaaccagccctttgagcatgtttggctcggcactggtgac
gatggtcaccgctttcttcatcccctggaaaagctctcaattcttgattttattgacgat
gatattgggggggttgagcctgtaaaaccgccagaaatagaggctaccccattcaagctt
gtggaggaggtcaaagatctcaaggagctggcagctaagttgcgcggcgttaatgaattt
gcggttgatttggagcacaaccaatatcgatccttccaaggattgacttgtttgatgcaa
atttctacaagaactgaagattttatactagatactttgaagcttagaattcatatcggt
ccatatcttagggaagttttcaaggacccttctaagagaaaggtgatgcatggagcagat
cgagatattgtgtggctccaacgtgattttggcatttatatctgcaatttgtttgacact
ggccaggcctcaagggtattgaaattggagagaaatagtttggaatatcttttgcatcac
ttttgtgatgtttctgccaacaaagaataccagaatgcagactggagattccgccctctt
accaaagagatggtcagatatgccagagaagatacacactacctgttacacatatatgat
ttaatgagagcgaagttatcttccatgccaaaggaatctgaaaattccgatgctccttta
gtagaggtttacaggcgcagttatgatatatgcatgcatctctatgcgaaggaagttttc
actgagaattcctatctccacatatatgggttgcagggtgcttgttttaattctcagcag
cttgccgttgtttccggtttatatgagtggcgggatgttgttgctcgtacagaggatgaa
agtactggctatatattaccaaacaaaactctactcgaacttgctaaacagatgcctgac
acaactaacaagttaagacgattggtgaaatcaaagcattcatacattgagcagcatctt
tcttctgttgttagcgtcattaggcactctatgcagaatgctgccntttttgaggctgca
gccgaacatctgaaggtgggacgtgtggaaatggcatctgaagaaaatgtgttggtcagt
gatcgatctgaacccttaccagatgaatctggatgcaatttaattaatggtgatgtatct
gcaccttcaccagctgctccgcctcataaagaggactttagagagcatggatgtggtgcc
tccaatggagaaggaaatgttggatttgaagttcatcctagagacaacattgttacaggg
aaaagcaggaaaggaagtagcattggctgttccttagaatctgcaaaggttactggagca
actgttcaggtgcaaaagaagcctagtcgtgctttcagtgcactcttggggactgcagtt
ccaaaaagaaaatttgatgctggtgtcaaggacaaggaagataataagttggagcagatt
agatcttcagtcaatttcccattccactcattctcaggtgggatggagcaatcaaatccc
aagattgaagaaccaggaaaaggttctgaaaatccccattctgaaatgcccgttactgta
tcacctaccaggcggagtttaggagatattataacattagaaaatgattcacatgtacct
gagcacaaggaggataactcggtggcttctgctttaggcatggatggagaagatgatcct
atgtctctctcagagttgtcctcaagcttcaagaaatgctttccgccgcctaatcaaaat
aggaaagccagagaactggagaaatcccaggaatctggtggcttgcaggtgaaacctttt
gactatgaagcggcaaggagacaggtcatatttggagaaaagacagccaaggacgccaga
gctgggggagaaggcatgaagagcctgggttcaagggctaagaaaaaaactctagttgat
ggggatgatgggtcaaaagagctaccacaagggagacgacgtcaagcttttccagcaaca
ggaaatagaagtgcaactttccgttaa
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