Rosa chinensis (China rose): 112194870
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Entry
112194870 CDS
T06020
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112194870
03036 Chromosome and associated proteins [BR:
rcn03036
]
112194870
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112194870
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112194870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
SH2
HHH_3
Motif
Other DBs
NCBI-GeneID:
112194870
NCBI-ProteinID:
XP_024190883
LinkDB
All DBs
Position
3:43402686..43410968
Genome browser
AA seq
1633 aa
AA seq
DB search
MGKAVISDDEDEVELDEDDREPLDGDTVDQGGGGDEDEDEEDEGPDEYEKDDFIVDDVDE
EDEEERADSDEERQKKKKRKKKEEYVLDEDDYELLEDNNVIAPRRKGKFKRLKKAQRHAQ
GDLGGLSDEEEFLGTGKGGRTAEEKLKFSLFGGDDEGPPLEDIAEEEEPAEAEDDGEDEM
ADFIVDEEFDEAGVPVRQKKLKKKKSRQAPGVSSSALQEAHDIFGDVDELLQLRKQGLDS
SEWKERRLEDEFEPIVLSEKYMTEKDDQIREIDVPERIQVYEESTGFPPLDEKSIDDEST
WIFNQLASGTVPFFGKTGLGNSISRDDIIGFLNLHHVQKLDVPFIAMYRKEECLSVLKDP
EHMDMDDQNEKASTLKWHKVLWSIQDLHRKWLLLQKRKSALQSYYEKRFDEESRRIYDET
RLTLNQQLFESIMKSLKAAESEREVDDVDTKFNLHFPAGEIGVDEGQYKRPKRKSLYSIC
SKAGLWEVASKFGYTSEQFGLQLSLEKMRMDELEDAKETPEELASNFTCAMFETPQEVLK
GARHMAAVEISCEPCVRKYVRSNYLDMVELSTSPTPDGNTAIEAFHQFAGVKWLQRKPLN
RFGDAQWLLIQKAEEEKLLQVTIKLPEDRLNKLMSDFNEYYLSDGVSKSAQLWNEQRKLI
LQDALFNFLLPSMEKEARSLLTSRAKNWLLMEYGKVLWNKVSVGPYQRKENDISSDDEAA
PRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQERVLKFMT
DHQPHVAVLGAVNLSCVRLKEDIYEIIFKMVEENPRDVGHDMDGLSIVYGDESLARLYEN
SRISSDQLPAQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPLENFLTPDEKY
GMIEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAAFLQRSLVRSGAIFTRKD
FLTAHGLSKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVFEV
DGGNDDEDAMEMAIEHVRDRPAYLKNLDVEAYAKSKERENKIQTFCDIRRELIQGFQDWR
KKYEELSQDDEFYMISGETEDTLAEGRIVLATVRRVQGQRAICALESGLTGMLMKEDYSD
DSRDISDLSERLNEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRNQNIQPLDSYYHEDR
RSLQTEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAMKFLSDKDPGESIIRPSSRGP
SYLTLTLKVYDGVYAHKDVVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPL
VSHLKAMLNYRKFRRGTKAEVDELLKIEKLEFPMRIVYCFGISHEHPGTFILTYIRSTNP
HHEYVGLYPKGFKFRKRMFESIDRLVAHFQKYIDEPQHESGPSIRSVAAMVPMRSPATGG
SSGASAGWGGSNNEGGWRGQSFDRDRSSTPSSRTGRNDYRNGGGRDGHPSGLPRPYGGRG
RGRGTYNDSRGNNERHDSGFDGPTWGSDTKDGNDGLGNFPGAKVQNSPGREAFPGGWGTG
GSGSGGGSSWAGGGGSGWGQESGGGSGGWGGAAANDAAADNEPSGWGSDSKKKGSGDGTS
GWGSQSGGGGGGW
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagctgtcatctccgacgacgaggatgaggtcgagctcgacgaggacgatagg
gaacccctcgacggggacacagtcgaccagggcggcggcggcgacgaagatgaggacgaa
gaagacgaagggccagatgaatatgagaaggatgattttatcgtagatgatgttgatgaa
gaagatgaggaagagcgggccgacagtgatgaggagaggcagaagaagaagaaaagaaag
aaaaaagaggagtatgttcttgatgaagatgactacgagctcctggaggacaataatgtg
attgccccgcgcagaaagggaaaatttaagcggctgaaaaaagctcagaggcatgctcag
ggggaccttggtggattatctgatgaggaggagtttcttggtactggtaaagggggaaga
actgcagaggagaagcttaagttctcattatttggtggtgatgatgaaggccctccactt
gaggacattgctgaagaggaggaaccagcagaagcggaagatgacggagaagatgaaatg
gcagactttatagtcgacgaagaatttgatgaggctggtgttcctgtcagacagaagaag
cttaagaaaaagaaatccaggcaggcaccaggagtatcttcatctgctctgcaggaagcc
catgacatattcggtgatgttgatgaattactgcagctgcgtaagcaaggtttggattct
agtgaatggaaggaaaggaggcttgaagatgaatttgaaccaattgttctttcggaaaag
tatatgacagagaaggatgaccagattcgggagattgatgtcccagaaagaattcaggta
tatgaggaaagcactggttttcctccacttgatgaaaagagcatagatgatgagagtacc
tggatattcaatcaacttgcaagtggtacagttcctttttttggcaagacaggcctgggg
aattccataagcagggacgacatcattggattcttgaacttgcaccatgtgcagaaattg
gatgttccttttattgcgatgtatcggaaagaggagtgccttagtgtattgaaagatcct
gaacacatggacatggatgatcaaaatgagaaagcatccacactaaagtggcacaaggta
ctttggtccattcaggacttgcatagaaaatggttgctgcttcagaagaggaaaagtgct
ctgcaatcttattacgaaaagcggtttgatgaagaatctcgacgcatatatgatgagacc
agactaactttaaatcagcaactttttgaatcaattatgaagtcactaaaggctgcagaa
tcagagagagaagttgatgatgtggacaccaagtttaacttgcatttccctgctggtgag
ataggtgtggatgagggccaatataagaggcctaagaggaagtccctttatagtatctgc
agtaaggctggcttgtgggaggttgccagcaagtttggttacacctctgaacagtttggt
ttgcaattgtcactagagaaaatgagaatggatgagctggaggatgcgaaagagacgcca
gaggaattggcttcaaacttcacatgtgcaatgtttgagacacctcaggaagtgctcaaa
ggagccaggcatatggctgctgttgagataagctgtgagccatgtgtcaggaagtatgtt
aggagcaactacttggatatggttgagttgtccaccagcccaacaccagacggaaatact
gcaattgaagcttttcatcagtttgcaggggtgaagtggttgcaaagaaagccattaaat
agatttggggatgcacaatggctgcttatccagaaggctgaagaggagaagcttcttcaa
gttactattaagctaccggaagacagactaaacaagttgatgagcgactttaatgagtac
tatcttagtgatggtgttagtaaatctgcacaactgtggaatgagcagcggaagttgata
ttgcaggatgctcttttcaattttcttctaccttcaatggagaaagaagcaagatccttg
ttgactagtagggcaaaaaactggttattgatggaatacggaaaggttttgtggaataaa
gtctctgtgggaccatatcaacggaaagagaatgacattagttcagacgatgaagctgca
cccagggtcatggcttgctgttggggccctgggaagccagcaaccacttttgttatgtta
gattcatcgggggaggtgctagatgtgctttacacgggatctctcaccttacgctcccag
aacgttaacgatcagcaacggaagaaaaatgaccaagaacgtgttttgaagttcatgact
gatcaccaaccacatgtggctgttctaggagctgttaatttgtcttgtgttcgcctgaaa
gaagatatttacgagataatctttaagatggtggaggagaatcctagagatgttggacat
gatatggatgggttaagcattgtctatggagatgaatctttggctcgcctgtatgaaaac
tctcgcatttcatctgatcagctacctgcacaatcaggcattgtgaagcgtgctgttgct
ctggggcgttaccttcaaaatccattggcaatggtcgccactctttgtgggccaggaaga
gaaatcttatcttggaaactcaatcctttggagaactttctcaccccagatgagaagtat
ggaatgattgaacaagtcatggtagatgttacaaaccaagtaggccttgacataaatttg
gctataagccacgaatggttatttgcacctttgcaattcatttctgggctcggacctaga
aaagcagcatttttgcagcgatcgttggtaagatctggtgcaatatttactcggaaggac
tttttgacagcacatgggttaagtaaaaaggtgtttgttaatgcagttggtttcttgcgt
gttcggcgcagtgggctggctgctagcagcagccaatttattgatctgttggatgataca
agaattcatccagaatcctatattcttgcacaagaattggccaaagatgtttttgaagtt
gatggtggcaatgatgatgaggatgctatggagatggctatagaacatgttagggatcgg
cctgcttatctaaaaaatcttgatgttgaagcgtatgctaaaagcaaagagcgtgagaat
aagatacaaacattttgtgacatcaggagagaattaatacagggttttcaggattggcgt
aagaaatatgaagaactaagtcaagatgatgaattctatatgatttcaggtgaaactgaa
gatacccttgctgaaggaagaattgtgctggccacagttcgcagggtacaaggtcaaagg
gcaatatgtgcacttgaatctggactgactggtatgcttatgaaagaagactattcagat
gattcaagggatatttctgacttatctgagagactgaatgagggtgacattctcacgtgc
aagatcaaatctattcaaaagaataggtatcaggtgttcctagtttgtagagagagtgaa
atgagaaataatcgaaatcaaaatattcagcctctcgattcctattaccatgaagacagg
agaagtttacagacagagcaagaaaaagctcgtaaggagaaagagcttgcgaaaaaacat
ttcaagccaaggatgattgttcatcctcgcttccagaatattacggctgatgaagcaatg
aagttcttatctgataaagatcctggggaaagtattattcgtcctagttcccgtgggcct
tcgtatttgaccttaactctgaaagtttacgatggagtttatgctcacaaagacgtagtt
gaaggtggaaaggaacacaaggatatcactagcttactccgtattggaaagactctgaaa
attggagaggacacttttgaagatttagatgaggtaatggatcgttatgttgatcccctg
gtgtctcacttgaaggcaatgctaaattatcgcaaattccgacggggcacaaaagcagag
gttgatgaactgttgaagattgaaaaattggagtttcctatgaggattgtttattgtttc
gggatatcacatgaacatccagggactttcatactgacctatatacggagtacaaatcca
caccatgagtatgttgggctgtatcctaaggggttcaagttcagaaaaaggatgtttgag
agcattgatcggcttgtagcacattttcagaagtatattgatgagcctcaacatgagtcc
ggaccatcaattagatcagttgctgctatggtgcccatgcgaagccctgccactgggggt
tcttcgggtgcatccgcaggatggggtggttcaaacaatgagggtggttggagaggccag
tcgtttgacagggataggtcttctacaccgagttcgcgaacaggcagaaatgattacaga
aatggtggcggtcgagatggacatccaagtggcctacctagaccatatggggggcgcggt
cgaggtcgaggaacatataacgatagccgaggcaataatgagagacatgattcaggtttt
gatggtcctacatggggttcagataccaaggatggcaatgatggcttgggcaactttcca
ggtgccaaggttcaaaactcacctggcagggaagctttcccaggtggctggggtacaggt
ggaagtggtagtggaggaggcagcagctgggctggtggtggcggaagtggctggggtcaa
gaaagtggtggtggctcaggaggatggggtggggccgctgcaaatgatgctgctgctgat
aatgagccttcaggatggggttctgactcgaaaaagaagggttcgggtgatggtacttca
ggatggggttctcagagtggaggtggcggtggtggttggtaa
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integrated database retrieval system
