Rosa chinensis (China rose): 112194942
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Entry
112194942 CDS
T06020
Name
(RefSeq) phytochrome A-2
KO
K12120
phytochrome A
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112194942
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
Motif
Other DBs
NCBI-GeneID:
112194942
NCBI-ProteinID:
XP_024190977
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All DBs
Position
3:complement(7561638..7567644)
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AA seq
1126 aa
AA seq
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MSSSRPSHSSSNSGRSRHTARVIAQTTVDAKLHADFEESGSSFDYSSSVRVSSSVAGDQQ
PRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFRVIAYSENAPEMLTMVSHAVPSVGDH
PVLGIGTDVRTIFTGPSASALHKALGFGEVSLLNPILVHCKSSGKPFYAIVHRVTGSLVI
DFEPVKPYEVPMTAAGALQSYKLAAKAIARLQSLPSGSLERLCDTMVQEVFELTGYDRVM
AYKFHDDDHGEVIAELTKPGLEPYLGLHYPSTDIPQASRFLFMKNKVRMIVDCRAKNVKV
LQDEKLPLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGEGDDEVAGPDAAQT
QKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEDQIIEKNILRTQTL
LCDMLLRDAPLGIVSQTPNIMDLVKCDGAALLYKNKIWRLGLTPSDYQIQDISLWLTESH
MDSTGLSTDSLYDAGFPGALALGDVVCGMAAVKITSKDTIFWFRSHTAAEIRWGGAKHDP
DEKDDGWKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTMDVNNSG
IQMRLSDLKVDGMQELEAVTGEMVRLIETATVPILAVDVDGSVNGWNTKISELTGLPVDE
AIGKNLLTLVEESSTSMVERMLELALQGKEEQNIQFEIKTHGDRTDFGPIRLVVNACASR
DIHEKVVGVCFVAQDITGQKTVMDKFTRIEGDYKAIVQNPSPLIPPIFGTDEFGWCSEWN
PAMTKLTGWKREEVMDKMLLGEVFGINMACCPLKNQEAFVNLGVVINHAMTGQVSEKVPF
GFWNRVGKYTECLLCVSKKLDSEGAVTGVFCFLQLASPELQQALHVQRLSEQTAMKRLKA
LAYIKRQVRNPLSGILFSRKMIEGTELGAEQKKLVHTSAQCQQQLSKILDDSDLDSIIDG
YLDLEMVEFTLHEVLVASISQVMIKSNAKSIPIVQDANEEIMTETMYGDSLRLQQVLADF
LSVSVNYMPTGGQLTVAVNLTKDQLGQSVHLVHLELRISHGGSGIPEGLLNQMFGTDGDV
SEEGISLLISRKLVKLMNGDVQYLREAGKSTFIISAELAAAHKMSS
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcaagacccagtcactcatccagcaattcagggagatcaaggcacactgct
agagttattgctcagacaactgtagatgcaaagcttcatgcagattttgaggagtcgggc
agttcctttgactactcgagctcagtgcgtgttagcagttcagttgctggggatcaacaa
cctaggtctgacaaagtgaccactgcttatctccatcacatacagaaagggaagttgatc
cagccatttggctgcttgctagccttagatgacaaaactttcagggtcattgcatacagt
gagaatgcccctgaaatgctgactatggttagtcatgccgtcccaagtgttggggaccac
ccagttcttggcataggaacagatgtgagaacaattttcacaggccctagtgcctctgca
ttgcataaggccctcgggttcggggaggtttctctcttaaatcccatcttagtccattgc
aagtcatctggaaagcctttctatgctatagtccaccgggtaacaggtagcctggtcatt
gattttgaaccggtgaagccttatgaagtccccatgactgctgctggagctctgcaatca
tacaaacttgcagccaaagcaattgcacgattgcagtctttgcctagtgggagcctggag
aggctttgtgatacaatggttcaagaggtttttgagctcactggttatgacagggtgatg
gcctataaatttcatgatgatgatcatggggaagttattgcagagcttacgaagcctggc
ctggagccatatctgggtttgcattatccatccactgatatacctcaagcttcacggttc
ctgtttatgaagaataaggtccgtatgattgttgactgtcgtgctaaaaatgtcaaggtc
cttcaagatgagaagcttcctttggatctaacattgtgtggttcaaccctcagagcccca
catagttgccatttgcaatatatggagaacatgaattccattgcttctcttgttatggca
gtagtggtcaatgaaggggaaggggatgatgaggttgccggtcctgatgctgcgcagact
caaaagagaaagagactgtggggtttagtagtatgtcataacacaactccaaggtttgtc
cctttccctctcagatatgcctgtgagtttctagctcaagtgtttgccatccatgtgaat
aaggaattagagttggaggatcagattattgaaaagaacatcctgcgtacccaaacgctg
ttgtgtgatatgcttttgcgcgatgctcctttgggtatagtgtcacaaacccctaatatt
atggatctagtgaaatgtgatggggctgccctgctatacaagaacaagatatggagactt
ggattaactccaagtgactaccagattcaggacatatccttgtggctcactgagagccat
atggattccacaggtttgagtacagatagcttgtatgacgcggggttccctggggctctt
gctcttggtgatgtagtgtgtggaatggcagctgtgaagataacttccaaggacacaatt
ttttggttccgatcccacactgctgcagaaatccgatggggtggtgcaaaacatgatccg
gatgagaaggacgatggctggaaaatgcaccccagatcatcattcaaggctttccttgaa
gttgtgaagacaaggagcttaccttggaaggactatgaaatggatgcaattcattctttg
cagcttattctgaggaatgcattcaaggatgtgggaaccatggatgtaaacaacagtgga
atccagatgaggcttagtgacttgaaagttgatggtatgcaagaactggaagcagtgaca
ggtgagatggtccggttgattgaaacagcaacagtgccaattttggcagttgatgttgat
gggtcagttaatgggtggaacacaaaaatttccgagttaactggtcttcctgttgatgaa
gcaattggaaagaatttactcacacttgtggaagaatcttcaactagcatggtggaaagg
atgctggagttggcattgcaaggcaaagaggaacaaaacatccaattcgagataaaaaca
cacggtgataggactgactttggtcccatcaggttagttgtgaatgcttgtgcaagcaga
gatattcatgaaaaagttgtgggagtgtgttttgtggcccaagatatcactggtcagaag
actgtgatggacaagttcactcgcattgaaggtgattataaagcaattgtacaaaaccca
agtccattgatccccccaatatttggcactgatgaatttggctggtgttctgagtggaat
ccagcaatgactaagttaactgggtggaaacgagaggaggtaatggataaaatgctgttg
ggggaggtttttgggatcaacatggcttgttgtcctctcaagaatcaagaagcttttgtg
aatcttggtgttgtaatcaatcacgccatgactggtcaggtgtctgaaaaggttcctttt
ggtttctggaatcgagttggaaagtacactgaatgtttgttgtgtgtaagtaagaaattg
gacagtgagggtgcagtcactggggtcttttgcttcttgcagcttgctagcccagaattg
caacaagcacttcatgtccaacgtttatctgaacaaaccgctatgaagagattaaaagca
ttagcttatattaaaaggcaggtcaggaatcctttatctggaatactattttctcggaaa
atgatcgagggtactgagttgggagcagaacaaaaaaagctcgtgcataccagtgcccag
tgccagcagcagctcagcaaaatacttgacgactctgatcttgatagcatcattgatggc
tacttggacctggaaatggttgagttcactttgcatgaagtattggttgcctctattagt
caagtcatgattaagagcaacgccaagagtatcccgattgtccaagatgcaaatgaagag
atcatgactgagacaatgtatggcgatagtcttaggcttcaacaagtcttggctgatttc
ttgtcagtgtcggttaattatatgccaaccggaggccagcttactgtagcagttaatttg
acaaaagatcagctgggacaatctgttcatctcgtacatttggaactcaggatatcacat
gggggtagtgggattccagaaggattactgaaccagatgtttggaacagatggagacgta
tctgaagaaggcattagcctactcataagcagaaagctagtgaagctcatgaatggagat
gtacagtacctccgggaagcaggaaagtcaaccttcatcatatctgctgaacttgctgct
gcacataagatgagttcctag
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