Rosa chinensis (China rose): 112195134
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Entry
112195134 CDS
T06020
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112195134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112195134
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112195134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
112195134
NCBI-ProteinID:
XP_024191254
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All DBs
Position
3:complement(28473090..28477455)
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AA seq
300 aa
AA seq
DB search
MGLPDSSGGLLSELDVDAFRRLFPLRFYESHLAKSTRPDGRPLDKARDTSSALGAVASAD
GSALVKIGSTTMLAAIKMEVMTPSQESPDEGCIAIEFHMPPICSPIVRPGRPAEAAPVVS
KQLSDTILSSGMINLKELSLISGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSHLQIP
VVSMNDEGKVVVMSEENEGGKEPVNKEKRKLTLCSIPFSLTCILYKNYILADPTAEEESI
METLVTVVLDSSGQLVSLYKPGGSVLAYTSAIQDCVALTRQRVRELQTILDEATAGMEVD
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggattgcctgattcttctggaggtttgctgtctgaattggacgtcgatgctttcaga
cgcctatttcctcttcggttttatgagagccatcttgccaagtccacacgccctgatggc
aggccacttgacaaagctagagacacttcctcagcccttggggccgttgcatctgcggat
ggatcagcgctagtaaaaattggttcgacgacaatgttggctgctataaaaatggaagtc
atgaccccttctcaagagtcaccagatgagggatgcatagcaattgaattccacatgcct
ccaatttgctctccaattgtaaggcctggcaggccagctgaggcagcacctgttgtgtca
aaacagctatctgacactattttaagttccggcatgattaatttgaaggaattatccttg
attagtggaaaagctgcttggatggtctacctggacatatactgtttggatgctgatggt
gctctatttgatgctgctttgctgtcagcagtcgctgccttttctcacttgcagattcct
gtagtttctatgaatgatgaagggaaagtagtagtcatgtctgaggaaaatgagggagga
aaggagccagtcaataaagagaagaggaaactcacgttatgcagtattccattttcacta
acatgcatactttataagaattacatcttggcggaccctacagcagaggaagagtcgatc
atggaaacccttgtaaccgtggttttggattcatctggtcaacttgtgtctctttacaag
ccaggtggatcagttcttgcctatacatcagctatccaggattgtgtggcactcactagg
caaagagtgagggagcttcagacaattctagacgaagccaccgctggtatggaggtcgat
tag
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