Rosa chinensis (China rose): 112195265
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Entry
112195265 CDS
T06020
Name
(RefSeq) ABC transporter A family member 1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112195265
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rcn02000
]
112195265
Transporters [BR:
rcn02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112195265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_22
Motif
Other DBs
NCBI-GeneID:
112195265
NCBI-ProteinID:
XP_024191405
LinkDB
All DBs
Position
3:complement(28830785..28853992)
Genome browser
AA seq
1887 aa
AA seq
DB search
MGTGTRQLKAMLRKNWLLKIRHPFVTCAEILLPTVVMLMLIAVRTRVDTQIHPSQPYIRK
GMLVEVGKGISPNFEQVLELLLKKEEILAFAPDTEETRSMINVMSMKFPLLKHVSRVYKD
EQELETYIRSNLYGTCNQIMNCSNPKIKGAVVFHEQGPQLFDYSIRLNHTWAFSGFPDVK
SIMDTNGPYLNDLELGVNTVPTMQYSCSGFLTLQQALDSFIIFAAQQSDTRNIELPTSLS
SSTPSSLKVPWTRYGPSNIRIVPFPTREYTDDEFQSIIKSVMGVLYLLGFLYPISRLISY
SVFEKEQKIREGLYMMGLKDGVFHLSWFIAYALQFAVSSLIITVCTMDNLFKYSDKSVVF
IYFFFFGISAIMLSFLISTFFERAKTAVAVGTLAFLGAFFPYYSVNDEAVPMILKVIASL
LSPTAFALGSINFADYERAHVGLRWSNIWRASSGVNFSVCLLMMLLDALLYCVIGLYLDK
VLPRENGVRYPWNFIFQKCFWKNPNINKHHNSSPEVHIRDKVSQKAMFSRKENAKAAVEA
ITFDMRQQELDHRCIHIRNLHKVYASKKGKCCAVNSLQLTMYENQILALLGHNGAGKSTT
ISMLVGLLRPTSGDAMVFGKNIMTDMEEIRKELGVCPQHDILFPELTVKEHLEIFAILKG
VQEDFLNSVVIDMVDQVGLADKINTAVMALSGGMKRKLSLGIALIGNSKVIILDEPTSGM
DPYSMRLTWQLIKKIRKGRIVLLTTHSMDEAEALGDRIAIMANGSLKCCGSSLFLKHQYG
VGYTLTLVKSAPTASMAADIVYRHIPSATCVSEVGTEISFKLPLASSTSFESMFREIESC
MGSSTSNLETSCDEKDYIGIESYGISVTTLEEVFLRVAGCDYDEAAFFDQKNGPLCPESL
ISQTSHDPTHKQILHSKKSFAYYKEILGVLFTMVGKACGLIFATVLSFLNFLGVQCCGCC
IISRSTFWRHSKALFIKRAISARRDRKTIVFQLVIPAVFLFFGLLFLKLKPHPDQESVTF
TTSHFNPLLRGGGGGGPIPFDLSRPIAQEVAEYIEGGWIQTFKPSGYKFPNSEKALNDAI
EVAGETLGPALLSMSEFLMSSFNESYQSRYGAVVMDDQSDDGSLGYTVLHNSSCQHAAPT
FINLVNAAILRLASRNKNVTIQTRNHPLPMTNSQHLQRHDLDAFSAAVIVSIAFSFIPAS
FAVPIVKEREVKAKHQQLISGVSILSYWTSTYIWDFISFLFPSSFAIVLFYTFGLDQFIG
RGCLLSTVVMFLAYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLI
KTTTSANSFLKNFFRLSPGFCFADGLASLALLRQDMKNKSNKAFDWNVTGGSICYLCIES
ICYFLLALGLEILPFNKLTLATLKEWWKSIKSIPPSTSSYREPLLTSSTESVTLDLDEDT
DVKAERTRVLSGSIDNAIIYLRNLHKVYPGGQQHATKVAVHSLTFSVQEGECFGFLGTNG
AGKTTTLSMLTGEESPTDGTACIFGKDISSNPKAARQHIGFCPQFDALLEYLTVQEHLEL
YATIKGVPDNKIAEVVMEKLVEFDLLKHAGKPSFSLSGGNKRKLSVAIAMIGDPPIVILD
EPSTGMDPIAKRFMWEVISRLSTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS
PQHLKTRFGNHLELEVKPIEVSSVDLDKLCRVIQERLSYVPSHPMSLLDGLEVCIGATDS
IVAENASVAEISLSREMIIMIGRWLGNEERIKPLISSTPLSDGVLGEQLFEQLDRDGGIP
LPIFSEWWLFNDKFSAIDSFVLTSFPGAMFQGMNGLSVKYQLPCGPHLSLADVFGHLERK
RNRLGIAEYSISQSTLETIFNHFAANS
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggggaccggaacgagacagctcaaggctatgcttcgcaagaattggcttctcaaaatt
cgtcaccctttcgtcacctgcgctgagatattactccccactgtagtaatgttgatgctc
atagctgtaaggacacgtgttgatacgcagattcacccttcacagccatatatccggaaa
gggatgttggtggaagtgggcaaaggaatatcccctaattttgagcaagtgttggaatta
ctattgaagaaggaagagattttggcttttgcaccggacacagaagagacaaggtcaatg
atcaacgtgatgtcgatgaaatttcctctcttgaagcatgtttctagagtttacaaagat
gagcaggagctggaaacctatatacgctcaaatctctatggtacctgcaatcaaatcatg
aattgctcgaacccaaaaatcaaaggagcagtagtatttcatgagcaaggtcctcaactt
ttcgattatagcatacgacttaatcacacatgggctttctcgggatttcctgatgttaaa
tcgatcatggacacaaatggcccttacttaaatgacttggaactgggcgtgaatactgta
ccgacaatgcaatacagctgcagtggatttttaactctccagcaagcactagactctttt
ataatttttgcggcccagcaatcggataccagaaatatagaacttcctacttcgctgtcc
tctagcacaccttcctctctcaaagttccatggacgcgatatggtccgtcaaacatccgt
atagtcccgtttccaactcgtgaatacactgatgatgagttccagtccatcataaaaagt
gtcatgggtgtactgtatcttttgggatttctctatcctatttcgcgcttgatcagctat
tctgtgtttgagaaggaacaaaagataagagaaggtctttatatgatggggctgaaagat
ggggtattccatctatcgtggttcattgcatatgctttgcagttcgcagtttcttctctt
attattacagtttgcacgatggataaccttttcaagtatagtgacaagtcggtggtgttc
atttacttcttctttttcggaataagcgcgattatgctgtcatttttaatctctacattc
ttcgaacgagcgaagacagcagttgcggttgggacccttgctttcttgggtgcttttttc
ccatactactctgtcaatgacgaggctgttcctatgattctaaaggtcattgcctctctg
ctttcacctacggcttttgctctggggtcaatcaactttgctgattatgagcgtgctcat
gttggccttcgttggagcaatatatggcgggcatcatccggagtgaatttttcagtctgt
ctcctgatgatgttgctcgatgcgttgctgtactgtgtaattggtctttacctagataag
gtacttccgagagagaatggagttaggtatccctggaacttcatttttcagaagtgcttt
tggaagaatccaaatattaacaaacaccataactccagtccagaagttcatattcgtgac
aaggtatcccagaaggcaatgttttctcggaaagaaaatgctaaagctgctgtggaagca
ataaccttcgatatgagacaacaggagcttgaccatagatgcatccatataaggaatctg
cataaggtttatgctagtaaaaaggggaaatgttgtgctgtcaactcattacagctcacc
atgtatgaaaatcagattcttgctcttctaggacataatggagctggtaaaagcacaacg
atatcaatgcttgttggccttcttcgtcctacttcaggggatgctatggtgtttggaaaa
aatattatgacagacatggaggagatacggaaagagttgggtgtatgccctcagcatgat
atcctttttccagaattgacggtgaaggagcacttggaaatatttgctatattgaaaggt
gtgcaggaagattttctgaacagcgttgttattgatatggttgaccaagtagggttggcc
gataaaatcaatactgctgttatggctctttctggaggaatgaagaggaagttgtctctt
ggaattgcactaattggaaatagtaaggttataattcttgatgaacctactagtggaatg
gatccatactctatgcgcttgacttggcaattaataaaaaagattagaaagggcaggata
gtattactgacaacacactcaatggatgaagctgaggcacttggagatcgcatagccatc
atggccaatggttctttgaaatgctgcggaagttcccttttcttgaagcatcagtatggg
gttggttatactctaactctagtgaagtctgcacccactgcctctatggctgctgatatt
gtttaccgccatatcccatcagcaacatgtgtgagtgaggttggaactgagatttccttt
aagcttccattggcatcctcaacatccttcgaaagtatgtttagagaaattgagagttgc
atgggatcatccacatcaaacttagaaacaagttgtgatgagaaggactatattggcatt
gaaagttatggcatatctgtcacaactttggaggaggtgttcctgagggttgcaggatgc
gattatgacgaagctgctttttttgaccagaagaatggtccactgtgccctgagtctctg
atttctcaaacttctcatgatcctacccacaaacagattcttcactcgaagaaatctttt
gcttattataaagagattcttggggtcttatttacaatggtgggaaaagcctgtggttta
atttttgctacagtgttaagtttcttaaacttcttaggtgtgcaatgctgtggctgttgt
atcatttcaaggtcaacattttggaggcattctaaagcattattcataaagagggcaata
tctgcccgcagagaccgtaaaacaattgttttccagcttgtaattcctgcagttttctta
ttttttggtcttttatttctcaagctcaagccacatcctgatcaggagtctgttaccttc
acaacttcacattttaatccactattacgtggtggtggtggtggtggtccaattcctttt
gatctatcccggcctattgcacaggaggttgcagaatacatagaagggggttggatacaa
accttcaaacctagtgggtataaattccccaactcagagaaggcattgaatgatgcaatt
gaggtagcaggggaaactctgggacctgctttactttcaatgagtgaatttttgatgtcc
agctttaatgaatcttaccagtcaaggtatggcgcagttgtgatggatgatcagagtgat
gatgggagtttagggtacactgtgctgcacaacagttcctgtcagcatgctgccccaacc
tttatcaatttagtaaatgctgcaattcttcggcttgcttctcgtaataagaatgtgaca
attcaaacacgcaatcaccctttgccaatgacaaacagtcaacatctgcaacggcatgat
ttggatgctttctctgctgcagttattgttagtatcgccttctccttcattcctgcatca
tttgctgttcctatagtgaaggaacgtgaagtaaaagctaaacaccaacaacttattagt
ggagtttccatactgtcatattggacttctacatacatatgggacttcatcagcttcctc
tttccttcatcttttgccatagttcttttttacacatttggtctggaccagtttattgga
aggggatgtttactgtcgactgttgtcatgtttttagcatacggattagcaattgcatca
tcaacatactgccttacgtttttcttttctgatcacactatggctcagaatgtagttctc
ttggtccactttttcacgggactcattcttatggttatctcattcattatggggcttata
aagacgacgacaagtgcaaattcttttcttaagaactttttcagattatctccaggattt
tgctttgctgatggactcgcttcactggctcttctacgtcaagatatgaaaaataaaagc
aataaggcctttgattggaatgttactggtggctcaatctgctacctttgtattgagagc
atttgttacttccttttggcacttggtcttgaaatcttgcctttcaataaattgacactt
gccacactcaaggagtggtggaagagtattaaaagtatcccacctagcacttcaagttat
cgagagccccttctgacttcttccacagaatctgtcactctggaccttgatgaggacaca
gatgtgaaggcagaaagaactagggtactttcaggttccattgacaatgccatcatctac
ttgcgtaatcttcataaggtgtatccaggaggacagcagcatgctacaaaggttgcggta
cattcattgactttttcagttcaagaaggggaatgttttggttttttaggaacaaatgga
gctgggaagaccacaactctgtctatgttgactggtgaggaatctcctacggatgggact
gcttgcatatttggcaaggatatttcctccaatcccaaggctgctcgtcaacatattggg
ttttgcccacagtttgatgctctgttagaatatttaactgttcaagagcatcttgagctt
tatgccacgataaaaggagtaccagataataagatagctgaggttgtaatggaaaagttg
gtggagtttgacttgttaaagcatgctggcaaaccatcattttccctcagtgggggaaac
aagcgaaaattatcggtcgcaattgctatgattggagatcctcctatagttattcttgat
gaaccatcaacaggcatggatccaattgccaagagattcatgtgggaagtgatatctcgt
ttatcgaccagacgaggaaagacagcagtgatactgactacccatagtatgaatgaagct
caagctctgtgcacccgtatcggaatcatggttggaggccaattacggtgcattggaagt
ccccagcatttaaaaactcgatttggaaatcatcttgagctagaggttaaacctattgaa
gtcagctctgtggacttggacaagctttgccgagttatccaagaaaggctctcatatgtt
ccttctcatccaatgagcttacttgatggccttgaagtctgcattggtgccactgactcc
attgtggcagaaaatgcatcggtggcagagattagtttatcacgagaaatgataattatg
attggacgatggcttgggaatgaagaaagaataaagccgcttatatcttcaacaccactt
tcagatggggtgcttggtgaacagttatttgagcagttagatcgagatggtggaatacca
ttgccaatattttctgaatggtggctgttcaatgacaagttttcagcaatcgattcattt
gtcctaacatcatttcctggtgcaatgttccagggaatgaatggcttgagtgttaaatat
cagttgccttgtggtccgcacctctctcttgctgatgtatttggacaccttgaacggaaa
agaaaccgccttggcatcgcagagtacagtattagccagtccactctggagaccatattc
aatcattttgcagccaactcttga
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