Rosa chinensis (China rose): 112196026
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Entry
112196026 CDS
T06020
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
rcn03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112196026
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112196026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112196026
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
112196026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
112196026
NCBI-ProteinID:
XP_024192059
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All DBs
Position
4:complement(56538586..56542986)
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AA seq
627 aa
AA seq
DB search
MAEEQINFEEEEYGGAQKLQYQGSGAISALADEEPMVEDDEYDDLYDDVNVGEGFLQMHR
SEAPVPAGGVGNGGLQAQKTDVPELRVQAGASQEMKIPGVSVGGNYSSVPEQKVQPPVAS
VPETQVRHMGFQGSTTMPSNVGADSLEITAKFANEPLPSMNSGTTGPSAVTQLPANQMNM
KVNLNRPMANENQIRPPIENGSATLFVGDLHWWTTDAELESVLSQFGRVKEIKFFDERAS
GKSKGYCQVDFYDPAAASACKEGMDGYVFNGRACVVAFATSQTLKQMGANYVNKSQGQVQ
TQPQGRRPMNDGAGRGGGMNFQGGDTGRNFGRGNWGRGGQGVPNRGPGGPGRGRGGAMGA
KNMVGNNAGVGAGANGGGYGQGLAGPGFGGPVGGMMNAPGMMGPGFDPTYMGRGGGYGGF
PGPGFPGMLPQFPGVNAMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMEGHHAPMWNDP
SMGGWGGEEQDRRTRESSYGGDDGASEYGNYVEANHEKSAKSSAASRERERGSEREWTGT
SERRHRDEREQDLDRSEREHREPRYKEEKDSYRDHRRRERDVGYDDDWDRGQSSSRPRSR
SKAMPEDDHRSRSRDVDYGKRRRLPSE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggagcagataaattttgaagaggaggaatatggaggtgctcagaagctccaa
tatcagggaagtggagccatatctgctcttgcagatgaagaaccgatggtcgaagatgat
gagtacgacgatctatatgatgatgttaatgttggagagggtttcctgcagatgcatcga
tctgaggcaccagtccctgctggtggtgttgggaatggaggactccaagctcagaaaact
gatgttcccgaactaagagttcaagccggtgcttctcaggaaatgaaaattccgggggtt
tcagttggaggaaattattctagtgttcctgaacagaaggttcaaccaccagtcgctagc
gtgcctgaaactcaagtcaggcatatggggtttcaggggtcaacaactatgccctccaat
gttggtgctgattctttggaaattactgcaaaatttgctaacgagcctcttccatcaatg
aattctggcaccactggtccttcagctgttacacagttgcctgctaatcaaatgaatatg
aaggtcaatcttaatcgtccaatggctaatgaaaaccaaatccgtcctccaattgagaat
ggttcggccacgttgtttgtgggagatttacattggtggacaactgatgctgaactggaa
agtgttttatctcagtttgggagggtgaaggaaattaagttttttgatgaaagagccagc
ggtaaatccaaaggttattgtcaggtagatttttatgatcccgcggctgccagtgcatgc
aaagagggaatggatggttatgttttcaatgggagagcttgtgttgtggcctttgctact
tcacaaactttaaagcagatgggagctaattatgtgaacaaatcccaagggcaggttcaa
actcagccccaagggagaaggcccatgaatgatggtgctgggagagggggaggcatgaat
tttcaaggtggagacacggggagaaattttgggaggggtaattgggggcgaggtggacag
ggagtacccaacagaggtcctggtggaccaggccggggaagaggaggggccatgggtgca
aagaacatggttgggaataatgctggggttggagctggtgctaatggaggaggctatgga
cagggccttgcaggtcctggatttggcggtcctgtgggaggtatgatgaatgcacctggt
atgatgggtcctgggtttgatccaacatatatgggtcgaggaggtggttacggagggttc
cctggtcctggttttcctggaatgcttcctcaatttcctggtgttaatgcaatgggactt
gctggggttgctcctcatgtaaacccagctttctttggcaggggaatggcaacgaatggg
atggggatgatgggttcttctggaatggaggggcatcatgcccctatgtggaatgatcca
agtatgggtgggtggggaggagaagaacaggatcgaagaactagggaatcaagctatggg
ggtgatgatggtgcttctgagtatggaaactatgtagaggcaaatcatgagaaatcagct
aagtcaagtgctgcctcaagggaaagagaacggggatctgagcgtgagtggacaggaacc
tctgagaggaggcatcgtgatgagagagaacaagacttggacaggtctgaaagggagcac
cgggagcccaggtataaagaagaaaaagatagttacagagatcatcgtcgaagagagcgt
gacgtgggttatgatgatgactgggacagaggacaatcttcttcaagacctcgcagtagg
tccaaagcaatgccggaagatgatcatcgttctcgatcaagggatgtggattatgggaag
aggagacgattgccatctgagtga
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