Rosa chinensis (China rose): 112196058
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Entry
112196058 CDS
T06020
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112196058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112196058
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112196058
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112196058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_16
AAA_30
ABC_tran
TsaE
Sigma54_activ_2
DUF6206
PhoH
ATPase
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
112196058
NCBI-ProteinID:
XP_024192108
LinkDB
All DBs
Position
4:complement(19110858..19113751)
Genome browser
AA seq
773 aa
AA seq
DB search
MAVSEQDSVFDKLAYLSLVSRICIELENHDGGLGDKVLAKLIADMGRNCEAVDEFHKELK
QNGIDLPENVMSILLAIIHSVLPPTKVSEKNKIPDMAINNSMQRHRDDKRGQSELRRRRR
HRNSQQNRNLPIYKLKNELIQAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGC
TQPRRVAVTSVAKRVAEEFGCGLGEEVGYAIRFEDCTGPETVIKYITDGMLFREILVDND
LSQYSVIMLDEAHERTIYTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSAYFFDCKIF
TVPGRTYPVELFYLNQPERDYLDSALLTVVQIHLTEPEGDILLFLTGEEEIESACQSLNE
KMKEYGKGVPELIILPAYGAQPSEEQAKIFKPTPPGKRKVVVATNIAEASLTIDGIFYVI
DSGYAKQNVYNPKKGIDMLTVTPISQASAKQRAGRAGRTGPGNCYRLYTEAAFKNEMSPT
TVPEIQRTNLVYTTLMMKAMGINEVLSFDFMDPPPSQALISASKQLQNLGALDAEGSVTK
LGSRMAVLPLDPPLSKMLLASVNLGCSEEILTIIAMVEAGNIFYRPRGKQAEADQKRARF
LQPEGDHLTLLAVYEAWKAKNFSVPWCSENFVQFRSLSKARDIRRQLLTVMDKHELEVVS
AGRDRTMIRKAIVAGFFFQVAKRDPHEGYRTFVDNQLVFIHPSSVLFRRQPDWVIYNELV
MTTKEYMREISVIESKWLMELVPGFFKVTIPSRMSKRKRQEIEPFSRQCASYV
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtctgagcaagacagtgttttcgacaagcttgcatacctttctctggtctcc
aggatttgcatagagcttgaaaatcatgatgggggtcttggagacaaagtcttggcaaag
ttgatagccgacatgggacgaaactgtgaggcagtggacgagttccataaagagttgaag
caaaacggtattgacctgcctgaaaatgtcatgtctattttgttagcaattattcactct
gttcttcctcctacaaaggtttctgagaagaacaaaatcccagacatggcaattaacaat
agcatgcaaaggcatcgagatgataaaagaggtcaaagtgagcttaggcgtagaaggagg
catagaaattcacagcagaataggaacttgccaatatacaagttgaagaatgagcttatt
caagctgtgcatgaaaatcaggttcttgttgtcatcggtgagactggttcgggcaagaca
actcaggtaacacagtatcttgctgaagcaggttacaccacaaagggcaagattggatgt
actcaaccccgtagagttgcggtgacgtctgtggccaagagggttgctgaagaatttggt
tgtggattaggggaggaagtggggtatgctattcgttttgaagattgtactggaccagaa
actgtgatcaagtacataactgatgggatgctctttagggaaattttggttgataatgat
ctttctcagtactctgtgatcatgcttgatgaagctcatgaaagaacaatctacactgat
gtcctctttggattgctgaagcaactagttaaacgacgtcctgatcttcgcttgattgtc
acctctgccacattggatgctgagaagttttcggcttatttctttgactgtaagatattt
actgttcctggtagaacttatcctgtagaattgttctacttgaatcagcccgaaagggat
tacttggattcagctctattaactgttgtgcagattcacttgactgaacctgagggtgac
atacttctcttcttgactggtgaggaggagattgaatctgcctgtcagtctctgaatgag
aagatgaaagaatatggcaaaggcgttccagaattgatcattctaccggcttatggtgcc
caacctagtgaagaacaggcaaagatatttaagcctactcctccagggaagagaaaagtg
gtggtggctaccaacattgctgaagcttctttaaccattgatgggatattttatgtcatt
gattcagggtatgcaaagcaaaatgtgtataatccgaagaaagggattgatatgctgact
gtaactccaatttcacaagcatcagccaagcaacgagctggacgtgctgggcggacagga
ccaggcaactgttaccgcctttacactgaggctgcatttaagaatgagatgtcgcctact
acagttccagaaatccagagaacaaatcttgtatataccacgcttatgatgaaagcaatg
gggataaacgaggttctatcttttgacttcatggatccaccgccttcccaagcgcttatt
tctgcttctaaacaactgcaaaatctaggagcattggatgcagaggggtcggtgacaaaa
ttgggtagtagaatggcagtgttgcctctagatccacctttgtcgaagatgctgcttgcc
agtgtgaaccttggatgcagtgaggagattttgaccatcattgcaatggttgaggctggc
aatatcttctacaggcctagaggaaaacaagctgaagctgatcagaaaagggccaggttc
ttacaacctgagggagaccatctgactttacttgctgtttatgaggcatggaaagctaag
aatttctctgtaccctggtgttctgagaactttgtccagtttcggtcactgagcaaggct
cgggatatcaggagacagcttcttactgtcatggacaagcatgaattagaggttgtaagt
gcaggaagagatcgcacaatgatcagaaaggcgattgtagctggattcttcttccaagta
gctaaaagggatccacacgagggttatagaacctttgttgataatcagctagtttttatc
cacccgagcagtgttcttttccggagacaaccagattgggtcatctacaatgagctggtg
atgaccacaaaggagtacatgcgcgagatcagtgtaatagaatctaaatggctcatggaa
ctggtgccgggattttttaaggtaacaattccttcaaggatgagcaagcggaaacgtcaa
gaaattgaaccatttagtagacagtgtgcttcgtatgtgtag
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