Rosa chinensis (China rose): 112196072
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Entry
112196072 CDS
T06020
Name
(RefSeq) autophagy-related protein 18b isoform X1
KO
K17908
autophagy-related protein 18
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
112196072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcn04131
]
112196072
03029 Mitochondrial biogenesis [BR:
rcn03029
]
112196072
Membrane trafficking [BR:
rcn04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
112196072
Mitochondrial biogenesis [BR:
rcn03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112196072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
Beta-prop_Vps41
WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
BCAS3_WD40
WDR54
EIF3I
Beta-prop_HPS5
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
112196072
NCBI-ProteinID:
XP_024192124
LinkDB
All DBs
Position
4:complement(25493359..25498875)
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AA seq
372 aa
AA seq
DB search
MANQSSSSSYPILCASFNQDSSCFAIGTKNGFKVFDSNTGRLCYEGVIGAFAIVEMLFSS
SLLAIVGAGEEPSLSPRRLCLFNTTSGTALRELNFLTSILAVHMNRKRLVVILQDKTYVY
DINSLAILDTIDTVSNIKGLCAFSPSLDGCYLALPASISKGSVLLYNVMDLHLHCEIDAH
RAPLAAIALSSNGTYIATASEQGTIIRVHLVSEATKSYSFRRGTYPSTIFSLSFAPSMQL
PDILVGTSSSGSVHAFSLGFSNYQSRSKRSGTFLGSIIPDSVTDALDPAYHDVLHNVAPA
GVKSYAVIRKVEKVADTSTSEIVACRATISIITYNGYFQEYNLSINNQNEFLWSLEREFR
LLNVILDEAVSL
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcagtcctcctcctcttcctacccgattctctgcgcttccttcaaccaagac
tccagttgctttgccataggcacaaagaatggcttcaaagtattcgattctaatacaggc
agactctgctatgaaggagttattggcgctttcgctattgttgaaatgctatttagctct
agtcttcttgccattgttggagctggtgaagagccatctctatccccgcggcgtctctgt
ttgttcaatacaaccagtggaactgctcttcgagaattgaactttttgacttcaatactt
gccgttcatatgaataggaaaagacttgttgtcatcttacaggacaaaacatatgtatat
gacataaatagtcttgcaatcttggacactattgatactgtatcaaatataaaagggctt
tgtgccttctccccgagtttggatggttgttacttggctcttcctgccagcatctccaaa
ggatcagtgttgttatacaatgtcatggacctgcatttacattgtgagattgatgctcat
agagccccacttgctgcaattgcactttcttccaatggtacgtacatagcaacagcatcc
gaacagggaaccattatcagagtccatctagtatcagaagcaacaaagtcttatagcttt
cggagaggaacatatccatctactatattctccttatcatttgcgccatctatgcaactg
ccggatattctcgtgggcacaagttcatctggttctgttcatgctttctctctggggttt
tctaattaccagagcaggagcaaaagatcaggaacttttcttggatcaattatacctgac
tctgttactgatgcactagatccagcatatcatgatgtactgcataatgttgcacctgca
ggggtcaaaagctatgcagtgattcgtaaggttgagaaggttgctgatacatcaacttca
gaaatagtggcgtgtcgggccactatttctattatcacctacaatggttacttccaggag
tacaacttaagcatcaacaatcaaaatgagttcttgtggagtctggagcgtgaatttagg
ctactaaatgtcatattagatgaagccgtcagcttgtga
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integrated database retrieval system
