Rosa chinensis (China rose): 112196213
Help
Entry
112196213 CDS
T06020
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112196213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112196213
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112196213
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112196213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
ABC_tran
Sigma54_activ_2
TsaE
AAA_16
GIPC1_GH2
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
112196213
NCBI-ProteinID:
XP_040373410
LinkDB
All DBs
Position
4:complement(17610015..17617838)
Genome browser
AA seq
1190 aa
AA seq
DB search
MAAIDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRNCGNVDEFDAKLKENG
AEMPDYFVRTLLTIIHAILPPKPKSENDSMIDSTTEGKKTKFKALSIADNRDRVNDLQRE
IEMETKEKKSDREEWGDEREEDRRRGRGRDRDRYGERDRDRDRDRDRRERGRDRYDRDER
RRDTHHDYDKGRHTDRSNKHRRDGYQEDEDVREDGGNRRGGGDQRSGLHHSDEPELYQVY
KGRVSKVMDTGCFVQFSDFRGKEGLVHVSQMATRRIGNAKDVVKRDQEVYVKVISVSGQK
LSLSMRDVDQHTGKDLLPLKKSSEDDAHRTNPSVSKHDGPVTRTGLSGIRIVEENNVAPS
RRPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDEETEGMLYEEEGAEEELEIELNEDEPA
FLQGQSRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNR
PWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTVSFGQRSKLSLQEQRQSLPIY
KLKKELVQAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGCTQPRRVAAMSVAK
RVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVVMLDEAH
ERTIHTDVLFGLLKKLIKRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILY
TKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFSCQSLFERMKGLGKNVPELI
ILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPK
QGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSVPEIQRINLGLT
TLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPP
LSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAV
YEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTQIRKAIT
AGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWIIYHELVMTTKEYMREVTVV
DPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggctgccattgatgatggtttgaagaagctcgagtacctttccttggtttccaaagtc
tgttcagagctggaaacccatctagggtttggggataaagttcttgctgagttcataact
gagatgggacgaaactgtgggaacgtggatgaatttgatgccaaattgaaggagaatggt
gccgagatgcccgattactttgtccgcacactcctcactatcattcatgcaattcttcct
ccgaagccaaagtctgagaatgactcaatgatagacagtactactgaaggtaagaagacc
aagtttaaggctctgtctattgctgataacagggatagggtaaatgatctccagagggaa
attgagatggagaccaaagaaaagaaaagtgaccgagaagagtggggtgatgagcgtgaa
gaagataggcgtagaggtagaggtagagatagagacagatatggggaaagggatcgagac
agagatagagatagggataggagagagaggggcagggataggtatgacagagatgagagg
cgtagagatacacatcatgattatgataagggaaggcatacagaccgatccaataagcac
agaagggatgggtatcaagaggatgaagatgttagagaagatggtggtaacaggagagga
ggtggggatcagcggagtggactgcaccattctgatgagcctgaattgtatcaggtttat
aagggcagggtatcaaaagtcatggacacgggttgctttgttcagttcagtgactttagg
gggaaggagggtttggttcatgtttcacagatggcaacacggcgtattggtaatgctaaa
gatgtggtgaagagggatcaagaggtctatgttaaggtgatttcagtttctggtcagaag
ttgagcctttcaatgagggatgttgatcagcataccggaaaggatttgcttccattgaag
aagagctcagaggatgacgctcataggacaaacccttcggtatcaaagcatgatgggcct
gtgacaaggactggtctttctgggattagaattgtggaagagaacaatgttgccccttct
cggcggccattaaagagaatgagctcgccggagaagtgggaagccaaacagttgattgcc
tcaggtgttttgggggttacagaatatccaatgtatgatgaggaaacagaggggatgctt
tatgaagaagagggagctgaggaagagcttgaaattgagcttaatgaggatgagccagcc
tttttgcaagggcaaagcaggtattctgtagatatgtcacctgtgaaaatctttaagaat
ccagaggggtcattaagtcgtgcagctgcacttcaatctgcacttattaaagagcgcaga
gaagtgcgtgagcagcagcaaagaaccatgttggattcaatcccaaaggatctgaatcgt
ccctgggaagatccaatgccagagactggtgagaggcatcttgcacaggagcttagaggt
gttggtttgtcggcctatgacatgcctgagtggaagaaggatgcttttgggaagactgtt
agttttgggcagaggtcaaagctctcacttcaggaacagaggcagagcttgcctatctac
aagctcaagaaagaattggttcaggcagtgcatgaaaatcaagttcttgttgtcattggt
gagactggttcgggcaagacaacccaggtaacacaatatcttgcagaagcaggttacaca
acaatgggtaagattgggtgtacacaaccacgtagggtggctgcgatgtctgtagccaag
agagttgctgaagaatttggttgtcgtttgggggaggaagttggctatgctattcgtttt
gaggattgcactggccctgatactgtcatcaagtacatgactgatggtatgcttcttagg
gagattttgatcgatgaaaacctttctcagtactctgtggtcatgcttgatgaagctcat
gagaggacaatccatacagatgttctttttggattattgaagaaacttatcaagcggaga
ccagacctacgtttaattgtcacatctgctaccttagatgctgagaagttttcaggttat
ttcttcgactgtaacatcttcactataccggggagaacttttcctgtagagatactatac
accaagcagccagaaagtgattatcttgatgcatctctaatcactgttctacagattcac
ttaacagaaccagaaggggatatccttctcttcttgacgggacaggaagaaattgatttc
tcatgccagtcactttttgagaggatgaaaggtcttggtaaaaatgtacctgagttgatt
atcttaccagtttacagtgcccttcctagtgaaatgcagtcgaggatttttgatccagct
ccacctgggaagaggaaagtagttgtggctactaatattgctgaggcatcactaaccatt
gatgggatattttatgtaattgatcctggatttgcaaagcaaaatgtttataacccaaag
caagggctggattcactggtcataaccccaatttcacaagcatcagccaagcaaagagct
gggcgcgctgggcgtactgggcctggaaagtgttaccgcctctacactgagagtgcatac
cgcaatgagatgtcccctacttcagttccagaaattcagaggataaatcttgggttaact
acacttaccatgaaagcaatggggataaacgatctgttgtcttttgattttatggatcct
ccgtcaccccaagcactcatttctgctatggaacaactgtacagtttaggagcactcgat
gaggaggggcttctcaccaaactgggtaggaaaatggctgagtttcctcttgatccacca
ctatctaagatgctactggccagtgtggaccttggatgcagtgatgagatcttgaccatg
attgccatgattcagacaggcaatatattttacaggcctagggaaaaacaagcccaggct
gatcagaagagagccaagtttttccagccagagggagaccatctgactttacttgcagtg
tatgaggcttggaaagctaagaacttttcagggccatggtgctttgagaacttcgttcag
tctcgatcccttaggagggcacaggatgtcagaaaacagcttctaagcatcatggataag
tataaactggatgttgtgagtgctggaaagaattttacacagatcaggaaggcaattacg
gcgggatttttcttccatggtgctagaaaggaccctcaggaggggtatagaaccttagtg
gagaaccagccagtttatatccatccaagcagtgcgctcttccagagacaaccagattgg
atcatctaccatgagttggttatgactacgaaggagtatatgcgtgaggtaaccgtcgtt
gaccccaaatggcttgtggaactagcacccaggttcttcaaagtggcagaccctaccaag
atgagtaagcgcaagcgtcaagagcgtattgaaccgctatatgacagataccatgaacca
aactcttggcgtcttagtaaacgacgtgcatga
DBGET
integrated database retrieval system
