Rosa chinensis (China rose): 112196318
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Entry
112196318 CDS
T06020
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112196318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112196318
Spliceosome [BR:
rcn03041
]
Complex A
Other components
Complex A specific factors
112196318
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
eIF3g
zf-CCHC
RRM_5
PHD_4
KH_PNO1_2nd
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
112196318
NCBI-ProteinID:
XP_024192432
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Position
1:61982859..61986759
Genome browser
AA seq
769 aa
AA seq
DB search
MEAIQPNPIETLDHQPPSEPPASYNHHPPSESLVSDYKDPSPPPSQTLASQAAAAAAAAA
VENGNSADAGKAVALLISENGLTNTQSGTTDREVSGGEEETTSRRIRRSRWDPQPESENQ
GDESGSGKRKRKSRWAAEEPKPVVQLPDFMGGIEFDPEIQALNSRLLEISRMLSSGLPLD
DRPEGARSPSPEPVYDNMGIRINTREFRARERLNRERQEIIAQILKRNPNYKPPADYRPP
KLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDL
KPDPSENEDLHVLVEADTQDALDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD
EEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCPMKGTSGKKMDDEYQNF
LAELGGTVPESATKQTATLALGPGTSVSNPPWSNSGGSASSASHPGLGFSGIKPTTKEHD
DTNLYIGYLPPTLEDDGLIGMFSQFGDIVMAKVIKDRVTGLSKGYGFVKYADVQMANNAI
ASMNGYRLEGRSIAVRVAGKPPQPVVPPGLPASAMPSYPVSSQPVGAYPSQQFSPGGPLG
NAPPTSYAGTPVPWGPPIPPPYAPYVPPPPPASAMFYPPMSQPMAGYGPRYPPPPGAPPQ
LPSSEAQQSYPPPGVQSENPTQSLPTSMYGSSLPAMPPNGQHTYPPSSYGYSSYYNAVPP
PPPSTTDQSQNIGNVPWATSTPAPPPASSAEKATYGADAEYEKFMAETK
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatccaaccaaaccctatcgaaaccctagatcaccaacctccctccgaaccc
cccgcctcctacaaccaccaccctccttcggaatctctagtctccgattacaaggacccg
tctcctcccccatctcaaaccctagcctcccaggccgccgccgccgccgccgccgccgct
gtcgagaacggaaattccgccgacgccggcaaggcggtagctctgctgatatcggaaaac
ggactgaccaacacccagagcgggacgaccgaccgggaagtctccggcggagaggaggag
accacgagcaggcggatccgtcgcagccggtgggacccgcagcctgagtcggagaaccag
ggggatgaatccggtagcgggaagaggaagaggaagtcgcggtgggccgccgaggagccc
aagccggtggttcagctgccggatttcatgggaggtatagaattcgatcctgaaattcaa
gctttgaatagtaggcttcttgagattagtcggatgctctcttcggggttgcctttggat
gacagacccgaaggagctaggtctccgtcgccggagccggtgtatgataacatggggatt
aggattaatactagagagtttcgagcgcgtgagaggttgaatagagagaggcaggagatt
attgctcagattcttaagaggaaccctaactataagcctccggcggattacaggccgcct
aagcttcacaagaagctttacattcccatgaaggagtaccctggttacaattttattggg
cttattatcggcccaaggggtaatactcagaagaggatggagaaagaaactggtgcgaag
attgtgattagggggaaagggtctgtgaaggagggtaggttgcaacagaagagggatttg
aagcctgatccctcggagaatgaggacttgcatgttctggttgaggctgatacgcaggat
gctcttgatgctgcagctgggatggtggagaagctcttgcagcctgtggatgaggtgttg
aatgagcataagaggcaacagcttagggaactcgcggcgttgaatgggactattagggat
gaggagtattgtaggttatgtggtgagcctgggcatcgtcagtatgcatgtccttcacga
acctcaacctttaagagtgatgtgctctgtaagatatgtggtgatggtgggcaccctact
atcgattgtccaatgaagggtacatctgggaagaaaatggatgatgagtatcagaatttt
ttggctgagttaggtgggacagttcccgagtcagcaactaagcagactgctactctggct
cttggcccagggacttcagtaagcaatcctccgtggtctaacagtggtgggagtgctagc
agtgcatcacatccagggttgggtttttctggaattaagcctactacaaaggaacatgac
gacacaaatttgtacattggatacttgccacctacacttgaggatgatggtttgatcggt
atgttttcacagttcggtgacattgtgatggccaaagttatcaaggaccgggttactgga
ttgagtaaaggttatggatttgtgaagtacgcagatgttcagatggctaataatgctatt
gcaagcatgaatggctatcggcttgaggggcgatcaattgctgtcagagttgctggcaag
cctccccagcctgttgtgcctcccggactaccagcttcagcaatgccgtcataccctgtt
tccagtcagcctgttggtgcctatccctctcagcagttttccccaggtggtcctcttggg
aatgcaccacctactagctatgcgggtactccggttccatggggacctcccattcctcct
ccttatgctccttatgtccctccccctcctcctgcttcagcaatgttttatcctcccatg
agtcaacctatggctggttatggtccacggtaccctcctccccctggtgcaccacctcag
ctgccctccagtgaagcacagcagagttaccctcctccaggagttcaatctgaaaaccct
acccaatctttaccaactagtatgtatgggagctctttaccggcaatgccaccaaatggc
caacacacttatcctccatcttcatatggttactcatcttactacaatgctgttccacct
ccccctccctcaactacagaccaatctcagaacattggtaatgtgccatgggccacaagt
actccagctccccctcctgcttcttctgcagagaaagcaacatatggtgcagatgcagag
tatgagaagttcatggcagagacaaaatga
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