Rosa chinensis (China rose): 112196719
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Entry
112196719 CDS
T06020
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112196719
09122 Translation
03013 Nucleocytoplasmic transport
112196719
03015 mRNA surveillance pathway
112196719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112196719
03041 Spliceosome [BR:
rcn03041
]
112196719
03009 Ribosome biogenesis [BR:
rcn03009
]
112196719
03012 Translation factors [BR:
rcn03012
]
112196719
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112196719
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112196719
mRNA cycle factors
Stress granule specific factors
112196719
Spliceosome [BR:
rcn03041
]
Complex C
Other components
EJC/TREX
112196719
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
90S particles
Helicases
112196719
Translation factors [BR:
rcn03012
]
Eukaryotic type
Initiation factors
eIF-4
112196719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
PhoH
NAT10_TcmA_helicase
DUF1198
Motif
Other DBs
NCBI-GeneID:
112196719
NCBI-ProteinID:
XP_024192896
LinkDB
All DBs
Position
4:1803135..1804765
Genome browser
AA seq
411 aa
AA seq
DB search
MAATATSRASQTIRGVKNTVEEKLKFVTSESEGIEPIMSFDDMCLKEELLRGIYNHGFEK
PSAIQQRAIRPIIERRDVIAQAQSGTGKTSMIALAACQIVDTASREVQALILSPTRELAA
QTEKVILAIGNYLNIQVHSCIGGKSLGEDIRRLENGVHVVSGTPGRVCDMLDRKTLRPRQ
IKLLILDESDEMLSRGFKDQIYNVYRYLSHEVQVCLISATLPNEILEMTKLFMTDPVRIL
VKRDELTLQGIKQFFVSVEREDWKFDTLCDLYDTLTITQAVVFCNTKRKVDWLSEKLRSN
NFTVSSMHGDMPQKERDAIMKDFKNSESRILITTDVWARGIDVQHVSLVINYDLPNNREL
YIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaccgcaacctccagggcaagccaaacgatacggggtgtcaaaaacaccgta
gaggagaagctcaagtttgtgacctcggaatctgaaggtatagagccgataatgagcttc
gacgatatgtgccttaaagaagagctcctccgaggcatctacaaccatggctttgagaag
ccctcagctatccagcaacgggccatcagacccattattgagcgcagggatgttatcgcc
caggcgcagtccggtaccggaaagacatcaatgattgcactcgccgcttgccaaatcgtt
gacaccgcctccagagaggttcaggcattgatactttctccaacgagggaattggcggcc
cagacagagaaagtgatattggcaattggaaattacctaaatattcaagtacattcatgc
ataggaggcaaaagcttgggtgaagatatcagaaggctagagaacggagttcatgtggtg
tctggaactcccggtagagtctgtgacatgctcgacaggaaaactctacgtcctcgacaa
attaaattattaattctcgatgaatctgatgaaatgttgagcagaggcttcaaggatcag
atttacaacgtctaccgctatctttcgcatgaagtccaagtatgcttgatttctgccaca
cttccaaatgaaattctcgagatgactaaactattcatgactgatcccgtaaggatcttg
gtcaagcgtgatgagctgactttacagggaatcaagcaattttttgtttcagttgaaaga
gaagattggaagtttgatactctctgtgatctctatgatacccttacgattacacaagct
gttgttttctgcaacacaaagcgaaaggtcgattggctcagcgaaaagttgcggagcaat
aacttcactgtgtcttcaatgcatggagacatgcctcagaaagagagagatgctataatg
aaagactttaagaacagtgaatcacgaatcctcatcacaacagatgtttgggctcgaggc
atcgatgttcaacacgtttcgttggttatcaactatgatcttccaaacaatcgagagctg
tacattcatagaattggtcgttcgggtcgttttggacgcaaaggtgtggcaatcaacttt
gtcaagaacgatgatatcaggattttaagagacattgaacagtactacagtacccagatt
gatgagatgcccatgaatgtggctgatttaatatga
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