Rosa chinensis (China rose): 112196957
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Entry
112196957 CDS
T06020
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112196957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112196957
Spliceosome [BR:
rcn03041
]
Complex B
Other components
Prp19-related factors
112196957
Complex C
112196957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_3
zf-CCCH_3
zf-CCCH
RRM_YTH1
RRM_occluded
zf-CCCH_10
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
112196957
NCBI-ProteinID:
XP_024193228
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All DBs
Position
4:31502908..31505156
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AA seq
494 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLDYGLPVQVRDTALAIGSDDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGIDARVS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREAAEKAAEELSNRLVVKGLRLKLMWGR
PQAPKQDLEGTDEARQQAVAHSGLLPRAVISQQQSQLQDQSAPPVQHYYNIPPPASQERT
YYPSMDPQRMGAVVRSQDGAPSGPRGSGENSSGSERQHYAFQSMAPPHGQYNQQFYPQPY
SGYMPPPPYQQYPPQYHAAVPPPSSLPMNQHYQHSATPGTAPSGSTSSVPAQSNSGPSES
GSGSGPVPTGSSQQ
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctaaggaatgtggaggcggacggttgggagcgatcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccttacgttcgcatgaccaaagccgattac
gacaaagagtgcaagatctgcacccgccccttcaccgtcttccggtggcgccccggccgc
gacgcccgcttcaagaagtccgagatttgccagacctgcagcaagttgaagaacgtctgc
caagtctgcctcctcgatctcgactacggcctccccgtccaggtccgcgacaccgccctc
gccatcggctccgacgacgccattcccaagagcgacgtcaatcgcgagttcttcgccgag
gaacatgaccgcaaggctcgggctgggattgattatgaatcgtcgtacgggaaggcgagg
ccgaatgacacgattctgaagctgcagagaacgacgccgtattacaagaggaaccgggcg
catgtgtgcagtttctatattcggggcgagtgcactagaggtgctgagtgcccttaccgg
cacgagatgcccatcactggcgagttgtcacagcaaaatatcaaagatcgatactacgga
gtcaatgatcctgtggcaatgaagctacttaacaaggctggagagatgccctccctggaa
ccgccggaggatgaaagcattagaaccctgtatgtgggtgggattgatgcaagagtctct
gagcaggatttaagggatcagttttatgctcatggcgaaatagaatctgttaggatggtg
ctccaacgagcgtgtgcttttgtaacatacacaacaagagaagctgcagaaaaggccgca
gaagaactctccaataggctggtagtgaagggtttgaggttgaagttaatgtggggtagg
ccgcaggcaccgaaacaggacttggagggcacagatgaggctaggcaacaggcagtggct
catagtggcttgttgcctcgagcggtcatatcccaacagcagagccaattacaagaccaa
tctgcaccaccagtgcagcactactacaacattccacctccagcttcgcaggagagaacg
tattatccatccatggatcctcaaagaatgggtgcagttgttcgatcgcaggatggagct
ccaagtggccccagagggtcaggtgagaacagttctggttccgagaggcagcattatgct
tttcaaagtatggctcccccacatggtcaatataatcagcagttttatcctcaaccatac
agcggttatatgcctccaccaccttatcagcaataccctccgcaatatcatgctgcagtg
ccaccaccatcatccttgccaatgaatcaacattaccagcattctgcaacaccagggact
gcaccctcaggttctacatcgtctgtacctgcacaatcaaattctggaccttctgagtct
ggctctggctctgggcctgtgccaacagggtcatcacagcagtga
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