Rosa chinensis (China rose): 112197044
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Entry
112197044 CDS
T06020
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112197044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112197044
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112197044
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112197044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
nSTAND3
T2SSE
AAA_30
AAA_24
AAA_16
SRP54
ATPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
112197044
NCBI-ProteinID:
XP_024193337
LinkDB
All DBs
Position
4:complement(55127914..55136182)
Genome browser
AA seq
1306 aa
AA seq
DB search
MENRGNSEAIKLDKTTTTLEPENSSGGGLFVPGKDRVVYRPPERKSLLGLDVLAIAKREE
SKVEGGFKTPRERVASVVASLEEEENSESGVIDETGSDISTGVRSHSKRRYRGISASDTP
RTESTVTEDGQVDDRYKSRYSGERFRTDVLATPSGSSHSVRSQSSYNRDDRGSDRRDHKG
RSDRDDNDSERRDYQDSSRGDSWRERKRYGSDSKDYYGRREERGRYEQEYGGEYERKRGR
YEGSKRTPGRSDWDDGRWEWEETPRRDGYSNTSRRHQPSRSPMLLGASPDARLVSPWLGG
NTPHSGSAASPWDHISPSPVPIRASGYSSKSSSLKPGARSHQLTFSSENSQSFQGGEAFT
TDSAGEHNYEISESMRAEMEYNSDRAWYDREEGNTMYDTSDSSSLFFGDDASFQKKEAEL
AKRLVRRDGTKMSLAQSKKMSQMTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVIL
LVHDTKPPFLDGRVVYTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQSSNKSRQRF
WELAGSKLGDILGVEKTEEQVDADTAKVGEDGEIDFKEDAKFAQHMKNGEAVSDFAKSKT
LSQQRQYLPIYSVRDDLLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTVNGIVGCTQ
PRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLRDSDLD
KYRIVVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHI
PGRTFPVNILYSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYSLAERM
EQLISSSNKAVPKLLILPIYSQLPADLQAKIFQRAEDGARKCIVATNIAETSLTVDGIFY
VIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTENAYLNEML
PSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGL
TDLGWKMVEFPLDPPLAKMLLMGAELGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAARE
KFSIPESDHLTLYNVYQQWKQHQYRGDWCGDHYLHVKGLRKAREVRSQLLEILKTLKIPL
TTCWPDTDVVRKAICSAYFHNSARLKGVGEYVNSRTGMPCHLHPSSALYGMGCTPDYVVY
HELILTTKEYMQCATAVEPQWLAELGPMFFSVKDSDTSLLEHKKRQKEEKTAMEQEMENL
RKAQAEAEIENKQKEREKRSKQQQQISMPGLNKRSSTYLRPKKLGL
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggagaatagaggaaacagtgaagctattaagctggacaagacgacgacgacattggaa
cccgagaatagcagtggtgggggattatttgttcctgggaaagatcgagttgtgtataga
cctcccgagaggaaatctctcttaggtttagatgtccttgccattgcaaaacgggaagag
tctaaggttgagggtggattcaaaaccccaagagaaagagttgcatcggttgtcgcatct
ttagaggaggaggaaaactccgagtctggtgtaatagatgaaacagggagtgatatatcc
actggtgtacgcagtcattccaagagacgatatcgtggaatatctgcaagtgatacacct
cggacagaaagtacggtaacggaagatggacaagttgatgataggtacaagtctcgttat
tctggtgaacgttttcggacagatgttttggccactcctagtggaagttcccacagtgtt
aggtctcagagttcatataatagggatgatcgtggtagtgacagaagagatcacaagggt
aggtctgacagggacgacaatgatagtgagagaagagattatcaagatagtagtaggggc
gatagttggagggagagaaaaagatatggcagtgatagtaaggattattatggtcgaaga
gaagaacgtggtcgatatgaacaagaatatggaggagaatatgaaagaaagcggggtaga
tacgaaggttcaaagaggacacctggccgctctgactgggatgatgggagatgggaatgg
gaggagacaccacgacgtgatggttactctaataccagtaggcgtcatcaaccatcacga
tcccctatgctactcggggcctcacctgatgcacgactagtatctccttggctgggtggg
aatacacctcattctggttctgctgcttctccatgggatcacatatctccatctccagtt
ccaatacgtgcgtctggatactcatccaaatcttcaagtttgaaacctggtgcaaggtcc
catcaactcacattttcttcggaaaattcacagtcattccagggtggagaagcatttact
actgattcggctggagaacacaattatgaaattagtgaaagcatgcgtgcagagatggaa
tacaattctgatcgggcatggtatgatagagaagaaggaaatacaatgtatgatacaagt
gatagctcatcattgtttttcggagatgatgcttcttttcaaaagaaggaagcagagttg
gcaaaaaggctggttcgaagagatggaactaagatgagccttgctcagagcaaaaagatg
tctcagatgactgctgataatgcgcagtgggaggatcgccaacttttgaggtcgggtgct
gttagaggtactgaggtgcagacagaatttgatgatgaagacgaacgcaaagttattctt
cttgtacatgatacaaaacctcctttcctggatggccgagttgtttataccaagcaagca
gagcctataatgccaataaaggatcctacatctgatatggccataatatcacgcaaaggg
tctactttggttagggaaatccatgagaagcaaagttctaacaaatcacgccaacgtttt
tgggagctcgctggttccaaacttggggatatccttggtgttgagaaaactgaggagcag
gttgatgcagatactgctaaagtaggtgaggatggggagattgatttcaaagaagacgct
aagtttgcccaacatatgaagaatggggaagctgtcagtgattttgcaaagtcaaaaacc
ctctcacagcaacggcagtatttgcccatatattctgtgagggatgatttgttgcaggtg
attcgagaaaatcaagttattgttgttgttggagaaactggttctggaaagacaactcaa
ctgacacagtatctgcatgaagatggatacacggtaaatggtatagtaggttgcactcaa
ccaaggcgtgtggcagccatgagtgttgcaaaaagagttagtgaggaaatggagaccgaa
cttggtgataaagtcggctatgctattcgttttgaggatgttactgggccaaataccata
ataaagtacatgactgatggagttcttttgcgcgaaactctaagggattctgatcttgac
aagtatcgtatagttgtgatggatgaagcccatgaaaggtctctaaacacagacgtgctg
tttggaattttaaaaaaagtggttgcccaacgtcgtgatttcaagctcattgtgacctct
gcaactctaaatgctcaaaagttttcaaatttctttggaagtgtaccaatttttcacatt
cctgggagaacatttcctgttaatatactgtacagtaaaacaccatgcgaagattatgtg
gaaggtgcagtaaagcaggccatgaccattcatatcaccagccctccaggtgacatcctc
atcttcatgactggccaagatgagattgaggctgcctgttattcccttgcagagcggatg
gaacaacttatctcctcctctaataaagcagtgccaaaactgttgatacttcctatatat
tcacagctgcctgctgacctgcaagcgaagattttccaaagagctgaagatggggctcgc
aaatgtattgtagcaaccaatattgcggagacgtctctgactgtcgatggaatcttttac
gtcattgacacaggttatggcaaaatgaaagtatacaaccctagaatgggtatggatgct
cttcaagttttccctgttagtcgtgctgctgctgaccagcgtgctgggcgtgcgggtaga
actggtccaggaacatgttatcggctgtacacggagaatgcatacctgaatgaaatgctc
ccaagtcctgtgccggaaatccagaggactaaccttggtaatgtggtcttgttgctcaag
tcacttaaggttgaaaaccttctggattttgatttcatggatccacctccccaagataat
attctcaattctatgtatcagttgtgggtcttgggtgctcttaacaacgtgggcggcttg
acagaccttggctggaaaatggtggagtttccattggaccctccacttgctaaaatgctt
ttgatgggtgctgagctgggatgcttggacgaggttttgacaattgtgtccatgctctca
gtgccatcagtattctttaggcccaaagatcgggcagaggagagtgatgctgcacgagag
aaattctctattcctgaatccgatcacttgacgttgtataacgtttaccagcagtggaaa
caacatcagtatcgaggggactggtgtggggaccattacttgcatgttaaagggttacga
aaggctagagaggtgagatcccagctgctagagatcttgaagacactgaaaatcccactg
acgacttgttggcctgacactgatgttgttagaaaagctatctgctctgcatacttccac
aattctgctagattgaagggtgtgggggagtatgttaattccagaactgggatgccatgc
catctacatccgagcagtgctctctatggtatgggatgcactccagactatgttgtttat
catgaactgattttgactacgaaggagtacatgcagtgtgccactgcagtggagccacag
tggttggcggagttggggcccatgttcttctctgtgaaggattcagatacatcgctgttg
gagcataagaagagacaaaaggaagagaagacagctatggagcaagagatggagaatctg
agaaaggctcaagcagaggcagagatagaaaacaagcagaaggagagagaaaaaagatcc
aagcagcagcagcaaatttcaatgcctggtttgaacaagcgctcttctacatatttgagg
ccaaagaaactcggcttgtaa
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