Rosa chinensis (China rose): 112197187
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Entry
112197187 CDS
T06020
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112197187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112197187
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112197187
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112197187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
AAA_30
T2SSE
FtsK_SpoIIIE
AAA_16
AAA_29
Motif
Other DBs
NCBI-GeneID:
112197187
NCBI-ProteinID:
XP_024193540
LinkDB
All DBs
Position
4:complement(60986699..60991595)
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AA seq
715 aa
AA seq
DB search
MAHGRLNNSTSGLKRSFSDENRKPDAFGKRQKLSQHRKALPIASVEKRLVEEVRTHDTLI
IVGETGSGKTTQLPQFLYNAGFCGYGKLIGVTQPRRVAAMTVAKRVAEECGVTLGEKVGY
AVRFEDVTSSSTRIKYMTDGLLLREALLDPYLSKYSVVIVDEAHERTVQTDVLLGLLKNV
QNARSKVVNNHQDTKNTKTNNDMQLDKENGSQSLSFLKQCQGRNPLKLIIMSASLDARIF
SEYFGGARAVHIQGRQFPVDIYYTHHNVQDYLDASLTAVFQIHIEEDPGDILVFLTGQEE
IESVQRLVKERLKQLPETSQKLVAVPIFSSLPSEQQMQVFAPAPDGFRKVILATNIAETS
VTIPGIKYVIDPGFVKARTYDPNKGLSSLNVIPISKAQALQRSGRAGRERSGKCFRLYPE
NQFEKLEDSTKPEIKRCDLSSIILQLKVLGVDDVIGFDFIDKPSRSAIVKSLEQLYVLGA
LTDECKLSDPVGRQMASLPLDPIFSKALIRASETEFNCLEEMLITVAMLSVESIFFAPRE
KLNEARTAMKCFASPDGDHLTLVNVYRAFNEFSEKRSDLSKEKHEKSLRKWCKDNFINSR
SLKHARDIHSQIRGNVEQMDLHVASCGDDMLPFRRCLAASFFLNAALKQPEGTYRALANG
QVVRIHPSSVLFHEKPECIVFNELVETNHKYIRNTTRVDYLWLHELAPHFYAMQN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctcacggacggctcaataactccaccagcggcctcaaacgcagcttctccgacgag
aatcgtaagcccgacgcctttggcaagaggcagaagctttcgcagcacaggaaggctctc
ccgatcgcttctgttgagaagcgtctggtagaggaagttagaacgcatgatactttgatt
attgttggcgaaactggaagcggaaaaacaacacaattacctcagtttttgtacaatgct
ggattttgtgggtatgggaaactcattggggtaactcagcctaggcgtgtggctgctatg
actgtggcgaaacgggttgctgaggaatgcggtgttactttgggtgaaaaggttggttac
gctgtcagatttgaggatgtgacctctagttcaacaaggatcaagtatatgactgatgga
ttgctactgagggaagcactattggatccatatctctctaagtattcagtcgtcattgtc
gatgaagctcatgagagaactgtccagactgatgtcttactgggcttgcttaaaaatgta
caaaatgcaaggtcaaaagttgtcaataaccaccaagatacaaaaaacacgaagacaaat
aatgacatgcagttggataaagaaaatggttctcagtccttgagctttctcaagcaatgc
caaggaaggaatccattgaagttaattatcatgtctgccagtttggatgcacgcattttc
tccgagtacttcggtggtgcaagagctgttcacatccaaggtcgacagtttcctgtcgat
atatattatactcatcacaatgtacaagattatctagatgcatcgttaactgccgtattt
cagattcatattgaggaggaccctggtgatatacttgtatttttgactggtcaagaagaa
attgaatctgtacagagacttgtcaaagaaagacttaaacagttacctgaaaccagtcaa
aaacttgtagctgttcctatattctcatctcttccatcagaacagcaaatgcaagtgttt
gcaccggctcctgatggatttcgtaaggtaatattggcaacgaatattgctgagacatct
gtgacaatacctggaatcaagtatgtaatagatcctgggtttgtaaaagcacgtacctat
gatccgaataaagggttatcaagtttgaatgttattccaatttcaaaagcacaggctctt
cagagaagtgggcgtgcagggagagaaagatcagggaagtgcttccgcctctacccagag
aatcaatttgagaaacttgaggattcaacaaagccagagatcaagcggtgtgacctttct
agtataattttgcaacttaaggttctgggtgttgatgatgtcattgggttcgacttcata
gataaaccgtcaaggtcggctattgtcaaatcactggagcaattgtatgtgctaggtgct
ttaacagatgagtgtaaactatcagatccagttggacgtcaaatggcaagccttccccta
gaccctattttctcaaaagctctaatccgagcaagtgaaactgaattcaattgcctcgaa
gagatgttgataactgttgcaatgctctcagttgagtccatatttttcgctccccgtgag
aaattgaacgaggctagaactgcaatgaaatgctttgcaagtccagatggggaccacctc
actttggttaatgtatatcgagcgtttaatgagttttcagagaagagatcagatctcagt
aaagagaaacatgaaaaaagtctcaggaaatggtgcaaggacaatttcattaatagtcgc
tccctgaagcatgctcgtgacattcacagccaaatccgagggaatgttgaacaaatggat
cttcatgtagcttcttgcggggatgacatgcttccgtttcgaagatgtcttgcagcgtct
ttcttcctcaatgcagctttaaagcagcccgagggaacttacagggctttagcaaatggt
caggtggttcggattcatccgtcgtccgtgttgttccatgagaaaccagagtgtatagtt
tttaatgaactagttgaaactaatcataaatacatccgcaacacaactagagtcgattat
ttatggttacatgagcttgctcctcatttctatgccatgcagaattga
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