Rosa chinensis (China rose): 112197199
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Entry
112197199 CDS
T06020
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112197199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112197199
03012 Translation factors [BR:
rcn03012
]
112197199
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112197199
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112197199
Translation factors [BR:
rcn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112197199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
NACHT
AAA_22
nSTAND3
ATPase
Dicer_dimer
AAA_19
Motif
Other DBs
NCBI-GeneID:
112197199
NCBI-ProteinID:
XP_024193567
LinkDB
All DBs
Position
4:complement(57961763..57970741)
Genome browser
AA seq
1212 aa
AA seq
DB search
MPSSPSPILLLLHPSPPSPQSQFPSRPKASALRPSPLLVAMKDRPPSSYGAVYVPPHHRL
RSVITSPNYTSAASIASKKTTAAASLSKARTNGARTYYQTQQHEVQEQLHKPKLQHDSDY
DDGGVSDDEGSDRDYNMSSNPGASISDNLDEWKRKLTMLLRDNKKQELVSREKKDRRDFE
DIAALASRMGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVTLPLGLLRRVEVYLGDF
LSQKSRTKETFPDVSFSRSSSSGSIGTDEGLFEQPEPVAPNNAAMEKAFWRRSLQLRDKQ
HAWQESREGRKVMELRRSLPAYKEKDALLTAISLNQVVIISGQTGCGKTTQIPQFILESE
IEAARGAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYKVRLEGMKGRDTRLLFCT
TGILLRRLLLDGNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDS
ELFSSYFGRAQIIHVPGFTYPVRTHFLEDVLESTGCRLTPYNQIDDYGQEKMWKMSKQAP
RKRKSQIASVVEDALKAADFKGYSPQTRESLACWNPDCIGFNLIEYLLCNICENERPGAI
LVFMTGWDDINSLKEKLHANPLLGDPSQVLLLACHGSMASSEQRLIFDEPEDGVRKIVLA
TNIAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGE
CYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVKNA
IEYLKIIGALDENENLTILGRYLTMLPVEPKLGKMLLVGAIFNCLDPVLTIVSGLSVRDP
FLTPFDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKVAERDFAGYDYCWKNFLSPQSMKA
IDSLRKEFYSLLRDTDLIDANTATYNVWSYDEHLVRAVICYGLYPGICSVMHNEKSYSLK
TMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSFSKG
DIQDGHLKMLGGYLEFFMKPAVAEMYQCLRAELDELIQTKLRNPRMAIHKYHELLSAVRL
LLSEDLCEGRFVFGRQVRTTSKPSVGAAQPGLVSRTESGPGGDNSKSQLQTLLTRAGYAA
PTYKTMQLKNLKFQASVEFNGMQIMGQPCNNKKSAEKDAAAEAIQWLVSGTQMGHDHINH
MSMMLKKSKKGS
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgccctcttcaccatctccaattcttcttcttctccatccctcaccgccttctccacaa
tcacaattcccttcgcgtcccaaagcctctgccctcagaccctcaccactactcgtcgcc
atgaaggaccggcctccttcttcgtacggcgccgtttacgtccctccccaccaccgcctc
cgctccgtcatcaccagccctaattacacctccgccgcctcaattgcctccaagaagact
actgctgctgcttctctcagcaaagctcgcaccaatggtgctcggacctactaccagact
cagcagcacgaagttcaggaacagctccacaagccgaagttgcagcacgattctgattac
gacgacggcggcgtctccgatgatgaaggctccgatcgcgattataacatgtcgtcgaat
ccgggtgcttcaatctctgataaccttgatgagtggaaacggaagttaaccatgctgtta
cgtgacaacaagaagcaagagttggtttcaagggagaaaaaagatagacgtgattttgag
gacatagccgctctggcaagcagaatgggactttacagccatctgtatgcaaaagttgct
gtattcagtaaggtcccactgccaaactacagatttgatctggatgaccggcgacctcag
agagaggtgaccttgcctcttgggttgctgaggagagttgaggtgtacctcggagacttc
ctttctcagaagtctaggactaaggaaacctttccagatgtttccttttctagatcaagc
agtagtggcagtattggtactgatgaagggctctttgagcaacctgaaccagtggcaccg
aataatgctgcgatggaaaaagctttttggaggagaagcttgcagctgcgggataagcaa
cacgcttggcaggaatctcgtgaaggcagaaaagttatggaacttcgtagaagtctccca
gcttataaagagaaggatgctttgttgacagcaatttcactaaatcaggttgttatcata
tcagggcaaacaggctgtggaaagaccactcaaattccacaattcattttagaatctgag
atagaagctgcccgtggagctgtatgtagtattatatgtacacagcctaggcgaatatct
gctatgtctgtttcagaaagagttgcttcagagagaggggagaagttgggtgattcagtt
ggatataaggttcggttagagggcatgaaagggagagacacacgccttctcttctgcacc
actggcattttgttgagaagattgctacttgatggaaatttgaaaggtgtaactcatgtc
attgtggatgagattcacgaacgcggaatgaatgaagattttctgcttattgttctcaag
gatctccttcctcgccggccagaactgaggttgattctgatgagtgcaaccctagattct
gagcttttctcatcctactttggcagggctcagataattcatgttccaggttttacatac
cctgttcgaactcattttctggaggatgttctggaaagtaccggttgcaggttaactcca
tacaatcagattgatgattatggacaagaaaagatgtggaaaatgagtaaacaggcacca
agaaagaggaaaagtcaaattgcttctgttgttgaggatgcactcaaagcagctgatttt
aagggttacagtccccagactcgggaatctctagcctgttggaatcctgattgtatcggt
tttaatctcatagagtatctgttatgcaatatctgtgagaatgaaaggcctggtgccatt
ctagtttttatgactgggtgggatgacatcaattctctaaaggaaaagttgcatgcaaat
cctctcttaggtgatccaagccaagtcttgttgttagcatgccatggttccatggccagt
tccgagcagaggttgatatttgatgagcctgaggatggagtgaggaaaatagtgctggct
actaatattgctgagacgagtatcacaattaatgacgttgtttttgttattgattgtgga
aaggcaaaagagacttcatatgatgcactgaataatactccttgtttgcttccttcctgg
atatccaaggtttctgctcaacaaagaagaggaagagctgggcgtgttcaacctggggaa
tgttatcgtctctatcctagatgtgtgtatgatgcatttgcagaatatcaattgccggaa
atcttgaggacacctttgcagtctctttgtctgcaaatcaaaagtttaaaactcggaagt
atctcagagttcttatctagggctctacagtcaccagagttactagcggtgaaaaatgcc
atagagtatttaaagatcattggggccttggatgagaacgagaatctgactattttagga
cgctatctaactatgcttcctgtggagccaaaacttggaaagatgctcttggttggtgcc
atcttcaactgcctcgatcctgttttgactattgtttctggccttagtgtcagagatcct
ttcttaacaccatttgacaagaaagatcttgcggaggctgctaaatctcagttttcccga
gaccacagcgatcaccttgcacttgtgcgtgcctatgagggctggaaggtagctgaaaga
gactttgctggatatgactactgctggaaaaattttctttcaccacaatcgatgaaagct
attgattctctcaggaaggagttctactctttgctacgggatactgatcttattgatgcc
aacacagctacctataatgtatggagctatgatgagcatctcgtccgtgcagttatttgc
tatggcctgtatcctggaatttgctctgttatgcacaatgagaagtcatattcactgaaa
actatggaggatggtcaggtgctgctatactcaaactctgtcaatgctcgggaatctaaa
attccatatccatggctagtttttaatgagaagataaaggtgaactctgtttttctacgg
gattcaacagctgtatctgattcagtgcttctcctatttggtggaagtttttcaaaaggg
gatattcaggatggacacttgaaaatgttgggtggatacttggaattcttcatgaaacct
gctgtagcagaaatgtatcaatgtttaagggcagaacttgatgagttaattcaaaccaaa
ctacggaacccaaggatggccatccacaaatatcatgaactcctttctgcagtgcggctg
ctgctctcggaggatctatgtgagggtagatttgtatttggccgccaggttcgtacaacc
tcaaagccatctgtgggggcagctcagccaggcttggtttcaagaactgaaagtggacct
gggggtgataattctaagagtcagctccagacattgctcacaagggcaggatatgctgcg
cccacctacaaaacaatgcaactaaagaacctcaagttccaagctagtgtggagttcaat
ggaatgcaaattatggggcagccttgtaataacaagaagagtgcagaaaaagatgcagca
gctgaggccattcagtggcttgtgagtggaacacaaatgggccatgaccacatcaatcac
atgtcaatgatgttgaagaaaagcaaaaaaggatcataa
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