Rosa chinensis (China rose): 112197315
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Entry
112197315 CDS
T06020
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112197315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112197315
03012 Translation factors [BR:
rcn03012
]
112197315
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112197315
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112197315
Translation factors [BR:
rcn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112197315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
T2SSE
PhoH
AAA_23
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
112197315
NCBI-ProteinID:
XP_024193703
LinkDB
All DBs
Position
4:27110269..27124891
Genome browser
AA seq
1148 aa
AA seq
DB search
MRAAASLLVKSVASSNNACFRSHHLKFCLVVLQPQSQPHSSSSSPISISKRGFSGYAAEQ
FSDDEYECDFESQKASSSVANIDEWKWKLSLLLRSDKDQEIVSRDKRDRRDYEQISNLAK
RMGLYTEIYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQEHLDRVLLS
FRNVSANSGGDSEHFGQVENDKPDENADSLLDGSVMEKVLQRRSLRMRNMQRAWQESPEG
KKMLEFRKSLPSFKENQRLLQAIAQNQVVVISGETGCGKTTQLPQYILESEIESGRGAFC
SIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLL
SDRNLSGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNFFGG
APTIHIPGFTYPVKAHFLEDVLEMTGYKLTSFNQIDDYGQDKLWKTQKQLAPRKRKNQIT
ALVEDALSKSSFENYSPRARDSLSCWTADCIGFNLIEAVLCHICRKERPGAVLVFMTGWE
DISCLRDQLKAHPLLGDPNRVLLITCHGSMTTSEQNLIFARPPPNVRKIVLATNMAEASI
TINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKC
VYHAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVGFLKLIG
ALDENENLTNLGKYLSMLPVDPKLGKMLIMGAVFHCFDPVLTIVSGLSVRDPFLLPQDKK
DLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQ
FSYILRDAGLVDADASVNNKLSHNQSLVRAIICSGLFPGIASVVHRETSMSFKTMDDGQV
LLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALNHGIQAGHLK
MLDGYIDFFMDPSLMDCYLKLKEELNELIQKKLQDPSLDIHKEGKYLVLAVQELVSGDQS
EGRFVFGRENRKPKESGDNSRFTRDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRAL
VEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSRDEDDNSPPDVTNNMLKLLGKR
RRSKRHSG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgagagcggcggcgtctctccttgtcaaatcagtagcctcttccaacaatgcttgtttt
cgttctcaccacctcaaattctgtctagttgtactccaaccacaatcacaaccacactct
tcttcttcttctcccatttcgatttcgaagcgcggattttccggctacgctgcggagcag
ttctccgacgacgagtatgagtgcgatttcgaaagccaaaaggcttcatcttccgtggcc
aacattgacgagtggaaatggaaactgagcctgctgctgcgcagtgacaaggaccaagag
attgtttccagagataaaagggataggagagactacgagcaaatatctaacctcgccaaa
cggatgggactttacactgaaatatatggcaaagtggtggttgccagcaaggttcctctt
ccaaactaccgccccgatttggatgataagcgcccacaaagagaggtggttatccctctt
ggcttgcaaaggagggtagagggtttactgcaagaacaccttgatcgtgtcctgctaagt
ttccgcaacgtatcagccaattcaggtggtgacagtgagcacttcggtcaggttgaaaat
gataagcctgatgagaatgcagattctcttcttgatgggtctgtaatggagaaggttctt
cagcgtaggagtttgcgcatgcgtaatatgcaaagagcttggcaggaatcacctgaaggt
aaaaagatgctagagttccggaaatcactaccatctttcaaagagaatcagaggttgctg
caagcaatagcacaaaatcaggtagtagtgatatctggggagactggatgtggtaagacc
actcagcttcctcaatatatactagagtcagagatagaatctggccgtggagcattctgt
agcattatctgtacacaacctcgaagaatatctgctatggctgttgctgaaagagtgtct
gcagagaggggagagcctcttggtgaaacagtgggctataaagttcgattagagggaatg
aaaggaaaaaatacgcatctccttttctgtaccagtggtattctacttcgccgtctgttg
agtgatcggaacttgagtggtgtaacacatgtttttgttgatgaaattcatgaacgaggc
atgaatgaagacttcttgttgattgtattgaaagatctgcttccacgccgtcgggatcta
agattggttttgatgagtgccactctgaatgcggagctattttcaaatttttttggagga
gcaccaacaattcacattccgggtttcacatatccagtgaaagcacactttttggaagat
gtactggaaatgactgggtataagctgacttctttcaaccaaattgatgactatggccaa
gacaaactgtggaaaacgcagaagcagttagcgcctcggaaaaggaaaaatcagatcact
gctctagttgaggatgctcttagtaaatcgagttttgagaattatagccccagagcacgc
gattcattatcatgttggacggctgattgcataggatttaatcttattgaagcagtttta
tgtcatatatgtcggaaggaacggccaggtgctgtcttagtattcatgactgggtgggag
gatatcagctgtttgagggatcaacttaaagcccatcctcttttaggtgatcctaacagg
gttttgcttatcacatgccatgggtcaatgaccacgtctgaacagaacctcattttcgcg
agaccgcctcctaatgtacgtaaaattgttcttgctactaatatggcagaagcaagcatt
acaatcaatgatgtagtttttgtggtggattgtggaaaagcaaaagagaccacatatgat
gctttgaataatacaccttgtctactaccttcttggatatcccaagcatctgctcggcaa
agaaggggaagggctggccgggtgcagccaggcgaatgttaccacctttaccccaaatgt
gtgtatcatgcgtttgcagaataccaacttcctgaactcctaaggactcctttgaattct
ctctgcttgcaaatcaaaagtttgcaggtcggtagtataggagaattcttgtcagctgcc
ctgcaaccgcctgaaccccttgctgttcaaaatgctgttggctttctcaagttgattggg
gcattggatgagaatgaaaatttgacaaatctcggaaaatatttgtcaatgcttccagta
gatcccaaactagggaaaatgctgattatgggtgctgtatttcattgctttgatcctgtt
cttacaatagtgtctgggctaagtgtccgggatccattccttttgcctcaagacaaaaaa
gatttagcggggacagcaaaatctagattctctgcaaaagattatagtgatcatatggct
cttgttcgtgcatatgaaggatggaaagatgcagaaagagaaggatcagcatatgaatac
tgctggagaaattttctctctgcccagacacttcaagctattcattctcttcgtaagcag
tttagctacatcttaagagacgctggcttggtggatgcagatgcaagcgttaacaacaag
ctaagtcacaatcagtcattggtccgcgcaatcatatgttccggactattccctggcata
gcatctgtagtgcaccgagagacatccatgtctttcaaaactatggatgatggccaggtt
ttactatatgctaattctgtaaatgcacgttaccaaacaattccctacccttggctggtc
tttggtgaaaaagtaaaggtcaacacagttttcatacgcgattctactggtgtctctgat
tccattttgatcctttttggtggtgccctaaaccatggtatccaggctgggcatttgaaa
atgttggacggctatattgacttcttcatggatcctagtttgatggactgctatttgaag
cttaaagaagagcttaatgagcttattcagaagaagcttcaagatccaagcctcgatatc
cacaaggaaggaaagtatctcgtacttgctgttcaagagctggtatctggagatcaaagt
gaaggaagatttgtgtttggccgtgaaaacaggaagccaaaggagtccggtgataacagc
agattcacaagggatggaaccaatcctaagagtttgctacaaactctattgatgagagca
ggacattcacctccaaaatacaaaaccaagcacctcaagacaaatgagttcagagcactt
gtggagttcaagggcatgcaatttgttgggaagcccaagaaaaataagcagcttgccgaa
agggatgctgccatagaagcactggcctggttgactcacacctcagacaacagtcgtgat
gaagatgacaactccccacctgatgtcactaacaacatgctgaaacttctggggaaacgt
agaagatcaaagcgccactctggttaa
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integrated database retrieval system
