Rosa chinensis (China rose): 112197468
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Entry
112197468 CDS
T06020
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112197468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112197468
03041 Spliceosome [BR:
rcn03041
]
112197468
03009 Ribosome biogenesis [BR:
rcn03009
]
112197468
03016 Transfer RNA biogenesis [BR:
rcn03016
]
112197468
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112197468
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112197468
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112197468
Complex C
U4/U6.U5 tri-SnRNP related factors
112197468
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
Helicases
112197468
Transfer RNA biogenesis [BR:
rcn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112197468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
112197468
NCBI-ProteinID:
XP_024193924
LinkDB
All DBs
Position
4:complement(14144392..14152150)
Genome browser
AA seq
990 aa
AA seq
DB search
MEESQTLGKRKEPEGSENLENPNEGSPLKRRNFTRTCMHEVAVPSGYAPTKDESVHGTLS
NPVFEGKMAKTYKFELDPFQQISVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPVKALSNQKYREFNQEFEDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFMPPAVKMVFLSATMSNATEFAEWICNVHKQPC
HVVYTDFRPTPLQHYIFPVGGNGLYLVVDENEQFKEDNFMKLQDNFSKQKVGDGHRSANG
KGSGRIAKGGSAASGGSDIFKIVKMIMEKKFQPVIIFSFSRRECEHHALNMAKLDFNSQE
EKDVVEQVFRNAILCLNEEDRELPAIELILPLLLRGIAVHHSGLLPVIKELVELLFQEGL
VKALFATETFAMGINMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDEQGIC
IIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQ
HEKALPDIGKKVSQLEQEAEVLDSSGEAEVAEYDKIKLDIAQLEKKMMSEIMRPERVLIF
LLTGRLVKIREGGTDWGWGVVVNVVKKPSSGVGAASSRGGGYIVDTLLHCSPSSSENSSQ
PKPCPPRPGEKGEMHVVPVQLPLISALSKLRINVPSDLRPLEARQSILLAVQELGIRFPQ
GLPKLNPVKDMGIEDPEIVELVNQIEALEQRLYAHPLHKSQDVHQIKCFQRKAEVNHEIQ
QLKSKMRESQLQKFRDELKNRSRVLKKLGHINAEGVVQLKGRAACLIDTGDELLVTELMF
NGTFNELDHHQVAALASCFIPGDRSNEQIQLRSELARPLQQLQDSARRIAEIQNECKLET
DVDEYVESTVRPFLMDVIYCWSKGASFADVIQMTEIFEGSIIRSARRLDEFLNQLRTAAN
AVGEVDLEKKFEAASESLRRGIMFANSLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcaaacactcggaaaaagaaaagagcctgaagggtctgagaatttagaa
aaccctaatgaagggtctcccctgaagagaagaaacttcactagaacatgtatgcatgag
gttgcagttcctagtgggtatgctcccaccaaggatgagtcggttcatggaaccctttca
aatcctgtgtttgaagggaagatggctaagacatataagtttgagcttgatccgtttcag
cagatatctgtggcgtgtttagagaggaatgagtcggttttggtttcggcgcatacttcg
gcggggaagactgcggtggcggagtatgcgattgctatggcgtttagggataagcagagg
gttatatatacttcgccggtgaaggcattgagcaatcagaagtatcgggagttcaaccag
gagtttgaagatgttggattgatgaccggagatgttacaatatcacctaatgcgagttgt
ttggtcatgactactgagatccttagaggaatgctttacaggggttcggaggttttgaag
gaagttgcgtgggtgatctttgatgagattcattacatgaaggatcgggaaagaggggtg
gtttgggaagagagtattatatttatgccaccggctgttaaaatggtttttctttcggcc
acaatgtcgaatgccactgagtttgcagaatggatttgtaatgtgcacaaacagccttgt
cacgtggtgtacacagattttcgaccgactcctctgcagcattacattttcccagtgggt
gggaatggcttgtatcttgtggtggacgagaatgaacaattcaaggaggacaattttatg
aagctgcaggataatttctccaagcagaaagtgggtgatggtcacaggagtgcaaatggc
aagggaagtgggagaattgcaaaaggcgggagtgctgcatctgggggttctgacatattc
aaaattgtgaagatgattatggaaaagaaatttcagccggttattattttcagcttcagt
agaagagaatgtgaacatcatgcgttgaacatggctaagcttgactttaactcccaagag
gagaaggatgttgttgaacaggtttttcgcaatgcaatactctgcttaaatgaggaagac
agagagttgcctgctattgagttaatcttgccactccttctgcgaggcattgctgttcat
cattctggccttcttcctgttatcaaggaattggtggaacttctttttcaggagggcctt
gtaaaggccctctttgctactgagacatttgcaatgggtataaacatgccagcaaaaact
gttgttttcacagctgtgaaaaagtgggatggtgatagtcatcgatatattgggtctggg
gagtatatccagatgagtggtagggccgggcgtcgtggcaaagatgagcaaggtatttgt
atcataatgattgatgagcagatggaaatgaacacgctcaaggacatggtgttgggtaaa
ccagctcctttggttagtactttcagactcagctactactcaattttgaatttgctgagc
cgtgcagaaggccaattcacagctgaacacgtgataaagaattcctttcaccaatttcag
catgaaaaggccttacctgatatagggaagaaggtttcacagcttgagcaggaagcggaa
gtgcttgattcatcaggagaggctgaagttgcagagtatgataagataaaacttgatata
gcccaacttgagaagaaaatgatgtcagagataatgaggcctgaaagagttctaattttt
cttcttactggtcgcttggtcaaaataagggaaggtggaacagattggggttggggagtt
gtagttaatgttgttaaaaagccttcatcgggggtaggcgcagcttcttcacgtggtggt
ggttatatagtggatactttgcttcactgttctcctagttcaagtgaaaacagttcacag
ccaaaaccgtgtccccctcgtcctggagagaagggtgaaatgcatgtagtccctgttcag
ttgcccctgatatctgctctaagcaaactccgaataaatgttccttctgatttgcggcca
ctggaggcaaggcaaagtattcttcttgcagtgcaggaactgggaatacgttttccacaa
ggccttccaaagctgaatcctgtaaaggatatgggtattgaagatcccgaaattgttgag
ctggttaatcaaatagaagcacttgaacagagattgtatgcacacccactgcataagtct
caagatgtgcaccagattaaatgtttccaaaggaaagcagaggttaatcatgaaattcaa
caacttaagtccaagatgcgtgaatcacagcttcaaaaatttcgtgatgaacttaagaac
cgttcaagggtcttaaagaagcttggtcatattaatgctgagggcgttgttcagttaaag
gggcgggcagcctgcttgatagacaccggagatgaacttcttgttactgaactgatgttt
aatggtacattcaacgaattagatcatcatcaagttgcagctcttgcaagttgctttatt
ccaggagatagatcaaatgagcagatacagttgaggtcagagcttgcgagacccttacaa
caactccaagacagtgcaagaagaatagcagagatacaaaatgaatgcaaactggaaaca
gatgtagacgagtatgtggaatcaacagtgaggccattcttgatggatgtgatttattgt
tggtcaaagggtgcaagttttgcagatgttatacaaatgactgaaatatttgagggcagt
atcattagatctgctagaagacttgatgaatttttgaaccagttacgcactgctgctaat
gctgttggagaagttgatttagagaagaaatttgaagcagcaagtgaaagccttcgccga
ggtatcatgtttgcaaattccctttatctgtag
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integrated database retrieval system
