Rosa chinensis (China rose): 112197484
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Entry
112197484 CDS
T06020
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112197484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112197484
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112197484
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
112197484
NCBI-ProteinID:
XP_024193955
LinkDB
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Position
4:64851054..64854602
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AA seq
574 aa
AA seq
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MDLLQTYSDDQNPNSSPESSPPRLLPPKSAAPQVDDTMLALSVAKNRSVLSRPIDPTQHL
VDFNPTYDQLWAPIYGPSHPYAKDGLAQGMRNHKLGFVEDAAIEPFIFDEQYNTFQNYGY
AADPSASAGYNYVGDLAALQKNDAVSVYNIPQHEQKKRKIEKRKENEDGEEDAEMDPEEV
ANPASDAWLMKNKKSPWAGKKEGLPAELTEEQKKYAEEYAKKKGEEKGAGDKGEAVVEKT
TFHGKEERDYQGRSWIAPPRDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPNSGHLIL
SAGLDTKVKIWDVFNTGKCMRTYMGHSKGVRDICFSNDGSKFLSAGYDKNIKYWDTETGQ
VISTFSTGKVPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNEGKITQEYDQHLGAVNTIT
FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNSNWLAAQSMDNQI
LIYSTREKFQLNKKKRFAGHVVAGYACQVNFSPDGRFVFSGDGEGRCWFWDWKTCKVFKT
LRCHDGVCIGAAWHPLEQSKVATCGWDGLIKYWD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggatctcctccaaacctactccgacgaccaaaaccctaattcctccccggaatcttcg
cctccgcggctcctcccacccaagtccgccgcgccccaggtcgacgacaccatgctggcc
ctgtcggtggccaagaaccgcagcgtattgtcccggcccatcgacccgacccagcacctc
gtcgacttcaacccgacctacgaccagctctgggccccaatctacggcccatctcaccct
tacgccaaggacggcctcgcccagggcatgcgcaaccacaagctagggttcgtcgaggac
gccgccatcgagcccttcatcttcgacgagcagtacaacactttccagaactacggctac
gccgccgacccctccgcctccgccggctacaattacgttggcgatttggccgccttgcag
aaaaacgacgccgtttctgtgtacaacatcccccagcacgagcagaagaagcggaagatt
gagaagaggaaggagaacgaggatggtgaagaagacgccgagatggacccggaggaggtg
gcgaacccggccagcgacgcgtggctgatgaagaataagaagagcccatgggccgggaag
aaggagggtttgccggcggagctgacggaggagcagaagaaatatgcagaggaatatgcg
aagaagaaaggtgaagagaaaggtgccggcgacaagggagaggctgtggttgagaagact
actttccacggcaaagaagagagagactatcaaggaaggtcttggattgcgccgccgaga
gatgccaaggctactaatgatcactgttacattccgaaacggcttgtgcatacttggagt
ggtcacaccaagggtgtgtctgctattaggttcttcccgaattcggggcatttgattctc
tctgcagggctggatactaaggtgaagatttgggatgtgttcaacactggtaagtgtatg
agaacttacatggggcattcgaagggtgttagggatatttgtttttcgaatgatgggagt
aagtttttgagtgctggttatgataagaatatcaagtattgggatacggaaactgggcag
gtgatatctacattttcgactgggaaggttccgtatgtggtgaagcttaatccggatgag
gataagcagaatgtgttgttggctgggatgagtgataagaagattgttcagtgggatatg
aatgaggggaagatcactcaagagtatgatcagcatttgggtgcggtgaatactattaca
tttgttgataataatcggaggtttgttacatccagtgatgacaagtctcttcgtgtatgg
gagtttgggattcctgtggttatcaagtatattagtgagcctcacatgcattctatgcca
tcaatttcgttgcaccccaattcgaattggcttgcagcacaaagtatggacaaccagatt
cttatttacagcactagggagaagtttcagctcaataagaagaagaggtttgcaggacat
gttgttgcggggtatgcttgccaagtgaatttctcgcctgatggacggtttgttttctcg
ggtgatggtgaaggtcgatgctggttttgggattggaagacttgcaaagtcttcaaaact
ctcagatgtcatgatggggtgtgcattggggcagcttggcatcccttggagcaaagtaaa
gtcgcaacttgtggctgggatggcttgattaaatattgggactag
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