Rosa chinensis (China rose): 112197835
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Entry
112197835 CDS
T06020
Name
(RefSeq) putative E3 ubiquitin-protein ligase LIN-1 isoform X1
Organism
rcn
Rosa chinensis (China rose)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_LIN_C
ARM_LIN_2nd
ARM_LIN
Beta-prop_TEP1_2nd
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_C
WDR55
NBCH_WD40
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
EIF3I
DUF5074
SAUGI
WDR54
Motif
Other DBs
NCBI-GeneID:
112197835
NCBI-ProteinID:
XP_024194491
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Position
4:48406404..48415432
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AA seq
1329 aa
AA seq
DB search
MKMNLLSESVEAVASCSTTALVSSHNQERLDLKSIRAVVISSNQCILKLIANDKTRNSIR
VRCISKLQNQKQDFFEFSDQSVISNLYWGIDSIEAAITAEWPEEKAAQLRKAEQMLQVPA
LLDEDGVTAGIPNSYLVCCSYFYLSVVRKLQEDEWQVALHFLQAVLVSPRLVQTEFAHDL
YESLFPTCGGSERQEIRASKSLESIDKDEAIRQMARIYRDWLMYYKVMLYGATSQSQGGG
YRGILSPDKESLYSIHGKSTRSDCSNNIEHDHSLHTQWNYEKVHPFDPQEDIGIEDELKQ
SIHISEFEEYGKSKNDLNQATEFHVKTRELQRNSNIKRLQDLLNDSQSDTPTSVDSCSDY
SDYDIESEVIDGGECSTRDATIGADFSKKLQATSSTSDPKYEALSFSQVCQDPVPNEVSQ
VNNSMILSSRFTNSINGLLTISEHRDKRSKTHQNLYVQKEYASQRNYRINQRDHQRSVAR
KKHSSHSQKSSIELRLHSTKDSKSELLSITEKAISKLFQWEGLGKWDEDYAVEVTTIYQI
LCNKKGEKCAVLKDMILDQLLIGISASKEEKVIRVSVSILTTIVAANKSVIEDIKKKGLQ
LSDLASALKRNVHEAAILFYLMNPSPTEIKTLELLPALLGVVCSPNSYKGRPASVPTPLT
ASLMIIGVLVSSFDHATNNVHLAEISYPNVLHGLLDVARDSNIEELISWATILVKCIQYD
GNCRRYISRLAPMAPFSRLLECKMKHARCIALEFFHEVLCIPRSSATALLQRLQKEGSTK
IMNSLMLCVQQLQPEYQLLAANLLLHLDTLDNSSCKSAFTEEAMQVLLKLVASEEGSTTQ
HLSAFILSNLGGTYSWAGEPYTVAWLVKKAGVTSSYRRNMIKTIHWLDDCLEDSGTDSWC
SKISRSIINIGNPVFDSLVKGLKSTRRKVSRDCLIAIAWLGFEIAKSPDIIRNSACEILL
SGVEQFLHPGLELEERVLACLCIYNYASGKGMKKLIHFSEGVRESLRRLSNVTWMAEELH
KVADYVLPNRSQRISCVHTQILEVGVNYSGAVCALMYYKGFLHGGYSDGSVKVWNIKGQS
ATLVWDMKEHKKAVTCFSLLESRDSLISGSLDKTIRVWQVVRKKLECIEVIETKEPIRHL
NTCGDMIFAITRGHGIKVIDASRKVKDNCTNKKVKCMAVVQGKIYAGCKDSSIQELSTTS
NRAQEIKAASKFWRLQRRPINAVVTYKDWLYSASSIVQGSNLKEWKRHGRPQMSLKTGKR
EKVTAMGITEDFIYLNCNSSTNSIQIWLRGTQQKVGRISAGSRITSILTANDIILCGTET
GLIKGWIPL
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaacttgcttagtgaatcggtggaagctgtagctagctgttctactactgct
ttggtttcgtctcataatcaagagagattagacctcaagtccattcgggcggttgtcatt
tcaagcaatcaatgcattctcaaactcatagcaaatgacaaaactagaaactctataagg
gtgagatgtatctccaagcttcaaaatcagaaacaggatttcttcgaattctctgaccag
tctgtcatatcaaatctttactggggtattgacagcatagaagctgcaattaccgccgaa
tggccagaagagaaagccgctcagctgaggaaggcagagcagatgctacaagtgcccgcg
ctactcgatgaggatggagtcacagctggaattccgaacagttatttggtgtgttgctca
tacttttacctctctgttgttcgaaaactccaagaggatgagtggcaggttgcactgcat
ttcctacaggccgtgctggtctccccgagacttgttcagacagaatttgcgcatgacctt
tatgaaagtcttttcccgacttgcggcggttctgaaagacaagaaataagagcgagtaag
agcttggaatcaattgacaaggatgaagcaataaggcagatggcaaggatatatagagat
tggttgatgtattataaggtcatgttatatggcgcgacttctcagagtcaaggtggagga
tacagaggcattttgtcccctgacaaagagtcactatattcaatacatgggaaatccact
aggtcggactgttcaaataatattgagcatgaccacagcttgcacactcaatggaattat
gaaaaagtgcacccttttgatcctcaagaagatattggcatcgaagatgaactgaaacaa
tccatccacatctcagaatttgaagaatatgggaaatccaaaaatgatttgaatcaagca
acagagtttcatgttaaaactagagagctccagaggaattcaaatattaaaagactccaa
gatttgctgaatgactctcaatcagacacaccaacttcagtggattcatgctctgattat
tcagattatgacattgagtcagaggtcattgatggtggtgagtgctcaaccagagatgca
acaataggtgcagatttttccaagaaactgcaggctactagctccacatcagacccaaag
tacgaagcattatctttttcacaagtctgtcaggatccagtccctaacgaagtcagtcaa
gtaaataactctatgattctttcgagcagattcacaaattccatcaatggtttattaact
atttcagagcatagagataaaagatcaaagacccatcagaatttatatgtacaaaaggag
tatgcatctcagcggaactataggatcaaccaaagggatcaccaaagaagtgttgcaagg
aaaaaacatagttctcatagccagaaaagctctattgaacttcgcttacattccacaaaa
gattcgaaaagtgaactactgagtattactgaaaaagcaatttcaaaactatttcagtgg
gaaggattgggaaaatgggatgaagattatgcagtagaagttacaacaatatatcaaata
ctatgcaacaaaaaaggagagaaatgtgctgtcttgaaagacatgatattggatcaactg
ctcataggtatttcagcttcaaaggaggagaaagtgataagggtatcagtgtctatacta
actactattgttgcagctaataagtcagttatcgaggacataaagaagaaaggtctgcag
ttatctgatttggcaagtgctctaaaaagaaatgttcatgaggcagcaatactgttttat
ctaatgaatccatctcctacagaaattaagactttagaacttttaccggcattgttgggg
gtcgtgtgctctccaaacagttataagggtaggccagcatcagtgccaacacctctgaca
gcatcactaatgattattggagttttagtatcttcatttgaccatgccacaaataatgtg
cacttggctgaaatcagttatcccaatgtgctgcatgggctcctagatgttgcaagagat
agtaacattgaagaattgatctcctgggccactattcttgtcaaatgcatacaatacgat
ggaaactgcagaagatatatatcaagattagctccaatggctccattttcccgtctccta
gaatgtaagatgaagcatgccaggtgcatagcgctggaattttttcatgaagttctttgc
attccaaggtcatcggctactgccttgttgcagaggctgcaaaaagaaggaagcacgaag
attatgaactcactcatgctttgtgtccaacaattgcaacctgaataccaacttttggca
gcaaatttgctgcttcatttagatacactagataactcctcctgtaagagtgcatttaca
gaagaagctatgcaggttctcctcaagttggtcgcatctgaagaaggttccactacacag
cacttatctgcattcatcttatcaaatctcggtggaacatattcatgggcaggggaacca
tatacagtagcatggttggttaaaaaggcaggtgtgacttcctcgtatcgacggaatatg
ataaaaactatccattggttggatgattgcttagaggattctggcacggactcatggtgc
agcaaaatttccagaagcatcattaacattgggaatcctgtctttgattctttagtgaag
ggtctaaagagcacaagaaggaaggtttctagggactgtctaatagccatagcgtggctt
gggtttgaaattgcaaagagtccagatatcatcagaaattctgcctgtgagatcttactt
agtggagttgagcaatttttgcatcctggattggagctagaagaacgagttctagcatgt
ctctgcatatataactacgcttctggtaaagggatgaaaaagttaattcatttctcggaa
ggagtgagagaatcactaagacgcttgtcaaatgtaacctggatggcagaggagctacat
aaagtagctgattatgttctgccaaaccgatcacagcgaatttcttgtgttcatacccaa
attctcgaggttggagtcaattacagtggagctgtatgtgccctcatgtattacaaagga
tttcttcatggtggctactcagatggttctgtgaaggtctggaacataaaaggtcagtca
gccacactcgtatgggacatgaaggagcacaaaaaggcagttacatgcttttcactactt
gaatccagggacagccttataagtggatcactggacaaaactataagggtctggcaagtg
gtccgcaaaaaactggagtgcattgaggtgatagaaaccaaggaaccaattcggcatctg
aatacatgcggggacatgatatttgcaattacccgtggccatggaattaaggtgattgat
gcatcaagaaaggtcaaagataattgcacgaataaaaaggtaaagtgtatggcggtggtt
caggggaagatttatgcaggttgcaaggattcaagcatacaggagttgtctacaacaagc
aatcgggcacaagagatcaaagcagcatcaaaattttggaggctgcaacggagacccata
aatgcagttgtcacatacaaagattggctttacagtgcaagttcaattgtgcaaggttca
aacttgaaggagtggaaaagacacggcagaccccaaatgtcacttaaaaccgggaaaaga
gaaaaggtgacggcaatgggaataacggaagacttcatctacctcaactgcaactcatca
acaaacagcatccagatatggctaagagggacacagcagaaagtgggcagaatctcagca
ggaagcagaattacgagcatcctcacagccaacgacattatcttgtgtggtaccgaaacc
gggctaatcaagggatggatccccctatag
DBGET
integrated database retrieval system
