Rosa chinensis (China rose): 112198005
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Entry
112198005 CDS
T06020
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03440
Homologous recombination
rcn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112198005
03460 Fanconi anemia pathway
112198005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcn03032
]
112198005
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112198005
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
112198005
DNA replication proteins [BR:
rcn03032
]
Eukaryotic type
DNA Topoisomerases
112198005
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
112198005
FA (Fanconi anemia) pathway
112198005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
112198005
NCBI-ProteinID:
XP_024194756
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Position
4:complement(35758388..35769711)
Genome browser
AA seq
862 aa
AA seq
DB search
MASNKVLMVAEKPSIAFSIANVLSSGQMSTRKASTDVHEFEGTFHGFHVQFKVTSVIGHV
FSLDFPETYQNWTVTDPLDLFQAPVRKAEANPKAHIRRHLSQEARGFGNLVLWLDCDREG
ENICFEVIDCIGHTNETKRKIYRARFSSVTEKDILKAMDNLVEPNKDEALAVDARQEIDL
KVGVAFTRFQTSFFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSVRPY
ILQSGYELQLDWERNKLFDVDVAVMFQKLVMEDGIAEVTEISEKQESKGRPSGLNTVNLL
KIASSALGFGPQMAMQVAERLYTQGFVSYPRTESTAYPSSFDFRGTLGAQVNNPVWGSYV
QRLLTDGYQKPRSGTDAGDHPPVTPLRSATEDMLGNDAWRLYEYVCKHFIGTVSPDCKYV
RTKAEFSIGGEFFHCVGQRVLVKGFTSIMPWLAVNEKNLPQFTKGEKIEVGRVDLHEGMT
SPPEYLSESELISLMEKNGIGTDASISVHINNICERNYVQVQAGRKLVPTALGITLIRGY
QCIDPDLCLPDIRSFIEQQITLVAKGQADHFCVVQHVLQQFRQKYSYFVKQIENMDALFE
AQFSPLADSGRVLSKCGKCLRYMKHISTQPSRLYCNTCEEVYYLPQNGTIKLYKELTCPL
DNFELLICSMPGPDGKSFSLCPYCYNSPPFEGIDTLFGAAKSGSSGKLGKGAGMPCFLCP
HPTCRHSLISQGVCACPECSGTLVLDPVSAPKWRLCCNMCNFLVLLPQGAHQISTTPERC
PECDSTIIEVDFNKKTTPLEDGATLYTGCILCDELLHSLVEMKYGKSFFRGSRGRGRGSR
RGRGRGRGTGKMVDPKMSFRDF
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaacaaagttctcatggtcgccgagaagcccagcatagctttttcaatagcc
aacgttctctccagcggtcaaatgtctaccagaaaggctagcacggacgtacatgaattt
gaaggaacatttcatggattccatgtacagtttaaagtgacatcagttattgggcatgtt
ttcagtctagattttccagaaacatatcaaaactggacagtcactgatcctctggatctt
tttcaagctccagttcgcaaggcagaagcaaatccaaaggctcatattcgcaggcattta
agccaagaagctcggggttttggtaacttggttttatggctggattgtgatcgtgaagga
gaaaacatttgttttgaagttattgattgtattggccacacaaatgaaactaaaagaaag
atttatcgtgcacgattttcttccgttaccgagaaagacattttgaaggccatggacaac
cttgttgaacctaacaaagatgaggcattggctgtagatgctcgacaagagatagatttg
aaagtcggagttgcatttacacgatttcaaacaagtttttttcaggggaaatatggaaat
ctcgatgccagagttatctcctatgggccatgtcaaactcctacccttggtttttgtgta
cagcgctatttgcagataaatacgtttaaacctgaaaaattctggtctgtacgcccttac
atattacaaagtggctatgaacttcagctagactgggagcgtaacaaattgtttgacgtc
gatgttgctgtgatgtttcaaaagttagtaatggaagatggaattgcagaagtgactgaa
atatcagaaaagcaggaaagcaaaggtcgtccttctggtcttaacacagtgaatcttcta
aagattgcttcaagtgcactaggctttggcccacaaatggctatgcaagttgctgaacgc
ttgtatactcaaggcttcgtcagctatccgcgtaccgagagcacagcctatccttcttct
tttgactttagaggcacacttggggcacaagtaaataacccggtatggggtagttatgta
cagaggctgctcactgacggttatcaaaaaccacgatctgggacagatgcaggtgatcat
cctcctgttactccattgaggtctgcaactgaggatatgctgggaaacgatgcgtggaga
ttatacgagtatgtctgtaaacacttcatagggactgtatctcctgactgcaagtatgta
agaacaaaggcagaattttcaattggtggagagttcttccattgtgtaggacaacgtgtt
ttggtgaagggatttacttctattatgccatggttagcagtaaatgagaaaaatcttcct
caatttacaaaaggcgagaaaatagaagttggcagagtggaccttcatgagggtatgacc
tcacctccagaatatctaagtgagagtgagctaatttcgcttatggagaagaatggaatc
ggcacggatgcatcaatatctgttcatattaacaacatatgtgagcgcaattatgtgcag
gtacaagctggcaggaagttggttccaactgccttaggtattactctaataagaggctat
caatgtattgatccagatctgtgtttgccagatatccgcagttttattgagcagcagatt
actcttgttgctaagggtcaagcagatcatttttgtgttgtgcagcatgttctacaacag
ttccgacaaaaatacagttattttgtaaagcagattgaaaacatggatgcattatttgaa
gctcaattctctccacttgctgactcaggacgagttctcagtaaatgtggcaaatgtcta
cggtatatgaagcacatttccactcaaccttctcgtctctactgtaatacatgcgaagag
gtttattatcttcctcagaatggtaccattaagctctacaaggaacttacgtgccctctg
gataactttgagctattaatctgctccatgcctggcccagatggcaagtcattttctctt
tgcccttactgctacaatagtcctccatttgaaggtatcgacactctctttggagctgca
aaatctggttcatctggcaagctgggaaagggggctggcatgccatgcttcctttgccca
catcccacatgtcgacattcattgatatcccaaggagtttgtgcttgccctgaatgtagt
ggaactcttgttctagaccccgtaagtgctcccaagtggcgactatgttgcaacatgtgc
aatttccttgtgctcctcccccaaggggctcatcaaatctccactactccagagcggtgt
cctgagtgtgactcgacaatcatagaagtggactttaataaaaagacaacacccttggaa
gatggggcgaccctatatactggttgtattctttgtgatgagttactccattcactagtg
gagatgaagtacggaaagtcctttttcagaggttcaagaggaaggggtagaggatcaagg
agaggtaggggaagagggcggggtactgggaaaatggtggatcctaaaatgagcttccgt
gatttttga
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