Rosa chinensis (China rose): 112198110
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Entry
112198110 CDS
T06020
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112198110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112198110
Spliceosome [BR:
rcn03041
]
Complex B
Other components
Prp19-related factors
112198110
Complex C
112198110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
zf-CCCH
zf-CCCH_10
RRM_occluded
RRM_YTH1
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
112198110
NCBI-ProteinID:
XP_024194928
LinkDB
All DBs
Position
4:complement(66526081..66528810)
Genome browser
AA seq
496 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKTCTRPFTVFRWRPGR
DARFKKTEICQTCSKLKNVCQVCILDLEYGLPVQVRDTAMAINSTDVIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTAPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELAQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGLDGRIT
EQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKQDSEGTDEARQQAVAHSGLLPRAVISQQQNQIQDQSATVQHYYNMPPPPSSQERT
FYPSMDPQRMGAVVRSQDGAPSGPAGSGENKSGSERQHYAFQTMAPPHGHYHHQQFYPPP
YTAYMPLPPPAYQQQYPPQYHAAVPPQQSLTMNQQYQQHSVTPAASTSSASAASSSGPSE
STASESGSAPTASSQQ
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgcttaggaatgtggaggcagatggttgggaacggtcagacttcccc
atcatctgcgagtcctgcctgggagacaatccctatgttcgcatgacgaaagctgattat
gacaaggagtgcaagacttgtactcggccgttcaccgttttccggtggaggcctggccgt
gatgcccgattcaagaagacggagatttgccagacgtgcagtaagttgaagaatgtctgt
caagtttgcatcttggacctggaatatggcttgccagtacaggttcgagacactgctatg
gctatcaactccactgatgtgattcccaagagcgatgtcaatagggagttttttgccgag
gagcatgaccgaaaggctagagccggtatagattacgaatcttcctatgggaaagctcgg
cccagtgacactattctgaagcttcaaagaacagcaccctattacaaaaggaacagagca
catgtctgcagtttctacattcgaggtgagtgcacaagaggcgctgagtgcccttacagg
catgaaatgcccataactggggagttggcacaacaaaacattaaagatcgttactatgga
gtcaatgatccagttgcgatgaagctactgaacaaggctggagagatgccctccctcgaa
cctcctgaggatgaaagcatcagaaccctatatgtgggtgggcttgatgggagaattact
gagcaggatctaagggataacttttatgctcatggtgaaatagagtctgttaggatggta
ctccaacgagcttgtgctttcgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctccaataaactggtgataaagggtttgagattgaagttaatgtggggtagg
ccccaagcaccaaaacaggactcagagggcacagatgaagctaggcagcaggcagtggct
catagtggattgttgcctcgagcagtgatttcacaacagcagaaccaaatacaagatcaa
tctgcaacagtgcagcactactacaacatgccacctccaccatcttcacaggagaggaca
ttttatccatcaatggatcctcaaagaatgggcgctgttgttcgatctcaagatggggct
cctagtgggcctgcagggtctggcgagaacaaatctggttcagagaggcagcattatgct
tttcaaaccatggctccaccacatggtcattatcatcatcagcagttttatcctccccca
tatacagcttatatgcctctgccgccaccagcttaccaacaacaataccctccgcaatat
catgctgcagtgcctccacaacagtccttgacaatgaaccaacagtaccagcagcattct
gtaacacccgcagcttctacatcatcagcatccgcagcttcaagttctgggccttcagaa
tccacagcatctgaatctggatctgcaccaactgcgtcatcacagcagtga
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