Rosa chinensis (China rose): 112200158
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Entry
112200158 CDS
T06020
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112200158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112200158
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112200158
Complex C
U5 SnRNP specific factors
112200158
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
NBCH_WD40
Beta-prop_SPT8
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_DCAF12
Nbas_N
RMC1_N
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
112200158
NCBI-ProteinID:
XP_024196945
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All DBs
Position
4:26322228..26325565
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AA seq
344 aa
AA seq
DB search
MMQFAPSEGENALSVVGPRPMDLSTYNARPASGPNGKQRTSSLEAPIMLLTGHQSAIYTM
KFNPAGTVIASGSHDKEIFLWNVHGECKNFMVLKGHKNAVLDLHWTTDGSQIVSASPDKT
VGAWDVETGKRIKKMAEHSSFVNSCHPARRGPPLVVSGSDDGTAKLWDMRVRGAIQTYPD
KYQITAVSFSDASDKIFTGGIDNDIKVWDLRKAEVLMTLQGHQDMITGMSLSPDGSYLLT
NGMDCKLCIWDMRPYAPQNRCVKIMEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIW
DTTSRRILFMLPGHTGSVNESVFHPNEPIIGSCSSDKQIYLGEI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagtttgctccaagtgagggtgaaaatgctttgtctgtagttggtcccaggcca
atggatttgtctacatataatgctcgccctgcatctgggcctaatggaaaacaaaggact
tcaagtttggaggcaccaatcatgctgctgactggtcatcaaagtgctatatacacaatg
aaatttaaccctgccggaacagtcatagcatcggggtctcatgacaaggaaattttctta
tggaatgttcatggggaatgcaaaaacttcatggttttaaaggggcataagaatgctgtg
ttggatcttcactggacaactgatgggtctcagatagtatcagccagtccagacaaaact
gtgggggcatgggatgttgagacgggaaaaagaattaaaaagatggcagaacactcttca
tttgtgaattcttgtcatcctgctcggagaggaccgcctcttgttgtcagtggatctgat
gatggaactgccaaactatgggatatgcgtgtgaggggtgccatccaaacatatcctgat
aaataccaaatcacagcagtcagcttctcggatgcatcagataaaatctttacaggaggt
attgataatgatattaaggtttgggacttgcgcaaggctgaagtactgatgacacttcaa
ggacatcaagatatgataacaggtatgtcattgagtcctgatggctcttatcttctgact
aatggaatggactgcaaactctgcatttgggatatgcgcccatatgcaccacaaaatcgt
tgtgtaaagataatggaagggcaccaacacaactttgaaaagaacttgttgaaatgtagc
tggtcacctgatggaagcaaggtcacggccggcagttctgataggatggtctacatatgg
gatactacttctcgacgcatcttgtttatgctgccgggccacactggatctgtcaatgag
tccgtcttccaccccaacgagcccattattggatcttgcagtagtgataagcagatatat
ctgggggaaatctga
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