Rosa chinensis (China rose): 112200274
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Entry
112200274 CDS
T06020
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112200274
03036 Chromosome and associated proteins [BR:
rcn03036
]
112200274
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
112200274
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112200274
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
112200274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
112200274
NCBI-ProteinID:
XP_024197072
LinkDB
All DBs
Position
4:complement(66850536..66853698)
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AA seq
670 aa
AA seq
DB search
MDHSLAHPSQEDNMDQAPPKVSSLEPPISSSKPPKSSFVDPKLKLHLSAASSQGNNQKGK
AVQVWTEMVSSKSSAFSSFSSKPPRSPSPPKFPQSLEPSLSASSSKSKRRNRQRKKKNPS
VKKGLSSPSPSTLEPPLVIYSPSPPSSPSSSESPPSSTKLPPALRQTFASAHSHVRDQRG
KTCGYSLIKRGLSNPSPSSLKPALLSSSVPPPSCPREHSSSSSGSPPSSPKLPPTLRRAF
SSHHSHVANQRGRSYYSWVQKGSLPIYKVPKNIKASIKKDRVPKVLDQPLSPLTYKNYFA
ALLYAEEVYLEKWKDYQMLEVTLNLQEAIIKAKKKDEKIFVKLKLDSVPERRPFLLSRDF
VYARPSGRDVQPFEGILYRVVKSSHILVDFGHDFLYQHHPKRTYDISFSFNRLCFKRAHA
AVQAASYPLFQNYIFPDCVPEKIIISNNSTPKAAVRQILGFYGPPPYIIEGQRSVIRTGK
SDSKPYKLSKTGEIVREAALQIYKSSPDDRILICAPLNSTCDELMISLKKVIPECDMYRT
NAAFREVDEVPIEILLSCDHDGECFSCPPLAELQRFRLIFSTFVTSFRLHNEGVTAGHFS
HIFLVDAALATEPETMIALANFANESTAVIVTGSANHQPNQVRSGMARTEGLKTSYFERL
SKMRTTSDDT
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatcattcactggctcatccatctcaggaggacaatatggatcaagcaccaccaaaa
gtgtcatcccttgaacccccaatatcttcatctaaaccacccaaatcctcttttgttgat
cccaaactgaagctacatttgtcagctgcttcctctcagggaaacaatcaaaaggggaag
gcagttcaggtatggactgaaatggtttcatctaaatcatctgcattctcatcattttct
tctaagccacctcgatctccgtctccccctaagttcccacagtccttggaaccaagtctt
tctgcttcttcctcaaaatcaaagagaagaaaccgacagagaaagaaaaaaaacccgagt
gttaaaaagggcttatctagtccatccccatcaacgttagaacccccattggtgatttat
tctccatcacctccatcttccccatcttcatcagaatcaccaccatcgtccactaagctg
cctccagccttaaggcaaacttttgcctcagctcactcgcatgtaagagatcaacggggg
aagacatgtggttattcattgatcaagaggggcttatctaatccatctccatcatcactg
aaacccgcattgttgagttcttctgtaccgcctccatcttgccctagagagcattcatca
tcttcatctggatcacctccatcatcccctaagctgcctccaaccttaaggcgagctttc
tcctcacatcactcacatgtagccaatcagcgggggaggtcatattattcatgggtgcaa
aagggttcattacctatatacaaggttcccaagaacattaaagcttcgatcaagaaagat
agagtgcccaaagttcttgaccagccattgtctcccttaacctataagaactactttgct
gctctcttatatgctgaggaagtctacttggagaaatggaaagattatcaaatgttggaa
gtgacattgaacttgcaagaggcaattataaaggctaaaaagaaggatgaaaaaatcttt
gtaaaattgaagttagattcagttcctgagagacgcccattccttttatcaagggatttt
gtctatgcaagaccttcgggtagggatgttcagccatttgagggcattctctaccgtgtg
gtgaagagcagtcatatattagttgatttcggacatgactttctttatcagcatcatccg
aaacgcacatatgacatcagcttctcatttaacagactttgttttaaaagagctcatgct
gcagttcaagctgcatcatatcctttgttccagaactacatctttcctgattgtgttcca
gaaaagatcatcatttccaataattccacaccaaaggctgcagttagacagattttaggc
ttttatggcccgccaccctatattatagagggccaacgctccgtgattcgtacaggaaaa
tctgactctaaaccgtataaactatcaaaaacaggagagattgttcgagaagcagcattg
caaatctataaaagctctccagatgatcgtattctcatatgtgcccccttaaacagcaca
tgcgacgagctgatgattagtttgaagaaagtgattccagagtgtgacatgtatcgaacc
aatgctgcatttcgagaggtagatgaggtacctattgagattctcctctcatgtgatcat
gacggcgaatgtttttcctgtcctccactcgcagaactccagaggtttaggctgatcttc
tccacatttgttactagctttcggctacacaatgaaggcgtcactgctggacatttcagc
catatttttctggtggatgctgctttggctactgagccagagacaatgatagctctggct
aattttgctaatgagagcacagctgttatagtaacaggttcagccaatcatcaaccaaat
caggtgcgctctggtatggccaggaccgaaggattgaagacatcatactttgaaaggctc
agtaagatgagaacaacatcagatgacacctaa
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