Rosa chinensis (China rose): 112200367
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Entry
112200367 CDS
T06020
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112200367
09122 Translation
03013 Nucleocytoplasmic transport
112200367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112200367
03041 Spliceosome [BR:
rcn03041
]
112200367
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112200367
Spliceosome [BR:
rcn03041
]
Complex C
Other components
EJC/TREX
112200367
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112200367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
112200367
NCBI-ProteinID:
XP_024197160
LinkDB
All DBs
Position
4:63944686..63961361
Genome browser
AA seq
1860 aa
AA seq
DB search
MSLPPVERSHIKEDHLREWKSGNPSFKLPEPVPMLRFLYELCSTMVRGELPFQKCRAALD
SVEFSEKVSEQELASSLADIVTQMSQDLTMPGEHRARLTKLAKWLVESSLVPLRLFQERC
EEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQNSENT
SHNAGATIGIIKSLIGHFDLDPNHVFDIVLECFELLPDNNVFLELIPIFPKSHASQILGF
KFQHYQRLEVNDPVPFGLYKLTALLVKENFIDLDSICAHLLPKDDEAFEHYSSFSSKQLD
EANKIGKINLAATGKDLMEDEKQGDVTIDLFASLDMDSEAVGERSAEFENNQTLGLLTGF
LSVDDWYHAHVLFDRLSPLNPVEHIQICNSLFRLIEKSISSAYDMVRQARLNNLGSSSGT
SVGVMTTENSSASGSFIELKKELFQMLAIVGPYLYRDTLLLQKVCRVLRGYYLSAPDLGR
TGEVAVSASNPRLPLKEARSPRQVAMSRVEEAFRTCLLPSLQLVPANPAVGMEIWEVMSL
LPYEVRYRLYGEWEKEDERIPMVLAARQTAKLDTRRILKRLAKENLKQQGRMVAKLAHAN
PMTVLRTIVHQIEAYKDMIAPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKEDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVVLQELIQQMANVHHTED
LTEDQLDAMAGGETLRHHATGFGVTRHNKQLLKSTNRLRDSLLPKDETKLAIPLLLHLAQ
HRSLVIIDADAPYIKMVSEQFDRCHGALLQYVEFLCSAMPSASAYAQLIPSLDDLVHKYH
LDPEVAFLIYRPVMRLFKSPASSDVFWPLDNNDAQSITSANSESEAVQNSGNVVLDLGST
WNPITWLDLLHTAKAMLPARAWNSLSPDLYATFWGLTLYDLYVPRNCYESEIAKQQASLK
VLEEQPDNSISAITKRKKEKERIQDTIDRLTSELRKHEEHVASVRKRLSREKDKWLSSCL
DTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHMDVLICRTLQPM
ICCCTESEVGRLGKFLCETLKIAYYWKSDESIYERECGNMPGFAVYYRFPDSQRVRYGQF
VKVHWKWSQRITRLLGQCLESPEYMEIRNALIILSRISSVFPVTKKSGMNLERRVSKIKG
DGREDLKVLATSVGASLAARKPSLVSDEEFCMGYVELKSTASSKPSASNSGAIQSGPAVN
NSQTEPVGGRAGNLVSQHSELINSARDHVSKTKPADGRLERAESISTAKSDQGHLKLKGA
SLVNGSDAQASVPSATLQSGTSRPIENQVQVNEISNRTADENMGKLAAKNTSESELRAQA
KRSVPAGAKPLKQDLAKDESRSGKAAGATNASSITANGSTVSSSGKGSASLGIESKVEAG
SAKFSNTRIPSSKEEGAEVSDAARPPSSRFVHSPRHDSSATLSKSSDKLQKRTSPAEETD
RQSKRRKGEAEMKDFEGEARLSDRERSVDARLLDLDKSGSDDRSVYKATEKASDRSKDKG
SERHDKDHRERLDRPDKSRGDDLVERSRDRSMERHGRDHSAEKLQERGTDRSFDRLPDKS
KDEKGKGRYSDISAEKSHVDDRYHGQSLPPPPPLPPHIVPQSVSSGRRDEDSDRRTATTR
HTQRLSPRHDEKERRRSEENSSISQDDSKRRREDDFRERKRDDREGTSVKVEERDRERER
EREKEREKANLLKEDSDSIAASKRRKLKREHLASGEAGEYSPVHPPPPLSINLSQSYDGR
DRGERKGPIVTRTGYMEESSLRIHGKEVSSKMTRRDTDPMYDWDDDKRQRGEQKRRHRKN
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccgcccgtagagcgctcacacattaaggaggaccacctccgtgaatggaag
agcggaaaccctagcttcaagctcccggagcccgttccgatgcttcggttcctctacgag
ctctgctccaccatggttcgtggagaattgccgtttcagaagtgcagagccgctttggat
tcggtggagttttccgaaaaggtttcggagcaagagctggcttcaagcttggcagatatt
gtcactcaaatgtctcaagatcttaccatgcccggagagcatcgagctcgtctcacaaaa
ctggccaaatggttggtggaatcttctttagttccattaaggctttttcaggagcgctgt
gaggaagaatttttgtgggaggctgaaatgatcaagataaaggctcaagaactgaagagt
aaagaggttagagtaaacacccgtcttctatatcagcaaacaaagtttaatcttcttcga
gaagagagtgagggatatgccaagctggttacacttctttgccaaaattcagaaaatacg
tcacacaatgcaggagcaacaataggcattataaagtcattgatcggacattttgatctg
gacccaaatcatgtttttgatatcgttttggagtgtttcgaacttctgccagacaacaat
gtctttttggagttgataccgatttttccaaagtctcatgcttcacaaatacttggtttt
aaatttcaacattaccagcgtttggaagtaaatgatcctgtaccatttggactttataag
cttacggctttgctggtgaaggagaattttattgatcttgatagcatatgtgctcattta
cttccaaaggacgatgaggcatttgagcactacagctctttctcctccaagcaacttgat
gaggctaataaaattggtaaaattaatcttgctgctactgggaaggatctaatggaagat
gagaaacaaggagacgtgacaatagatctctttgcatctttagacatggattcagaggca
gtaggagaaagatctgcagagtttgaaaataatcaaactttgggcttgcttactggtttt
ctttctgtagatgactggtatcatgcacacgtactatttgaccgtctgtcacccctaaat
cctgttgaacatatccaaatctgtaatagcttgtttagattgattgaaaagtcaatctct
tctgcatatgacatggttcgtcaagcacgtctcaataacttggggtcatcctcaggaacc
agtgttggtgtgatgaccacagaaaactcatcagctagtggttcttttatagaacttaaa
aaagaactttttcagatgcttgctattgttgggccttatctttatcgtgatactttgctg
ctacagaaggtttgcagagtattaagaggttattacttgtctgctccggatcttggaagg
actggtgaagtagctgtttctgccagtaatcctcgtttgcctctaaaggaagctaggtcc
ccccgtcaggttgcaatgtcaagggtagaggaagccttccggacatgtctacttccatct
ttacagttagtacctgcaaatccagctgttggaatggagatttgggaagtgatgagtcta
cttccttatgaggtgaggtatcgtttatatggtgaatgggagaaagaagatgaacggatt
cctatggttttagctgcaaggcaaacagccaagttggacactagaagaattttgaagcgg
cttgcaaaagaaaatttaaagcagcagggtaggatggttgcaaaattagctcatgcaaat
ccaatgactgtacttcgaacaattgttcatcagattgaggcgtacaaagatatgattgct
cctgttgtagatgcatttaagtatttgactcagctggagtatgatgtcctggaatatgtt
gtgattgaacgtctggcgcaaggagggcgtgataagctaaaagaggatgggcttaacttg
tcagactggcttcaatctttggcttcattttggggtcacttgtgtaaaaaatatccatct
atggaattgagaggccttttccagtatcttgtaaatcagttgaaaaagggccaaggaatt
gagcttgttgttcttcaggagcttattcagcaaatggcaaatgtccatcacacagaggat
cttactgaagatcagctggatgccatggcagggggtgagactctccgtcatcacgccact
ggttttggtgttactcgacataacaagcaactactcaagtccacaaacaggctaagggac
tcactgcttccaaaggatgaaaccaagctggcaatccctcttttgttacatcttgctcag
catcgttctttggtcataatagatgcagatgcgccttatattaagatggttagcgagcag
tttgatagatgtcacggagcactccttcagtatgtggaatttctttgcagtgccatgcca
tcggcatcagcttatgctcagctaattccttcacttgatgatcttgtccataaataccac
cttgatcctgaggttgctttcttaatttatcgcccagtaatgaggctcttcaagagcccc
gcgagttctgatgtcttctggcctctagacaataatgatgctcaaagtatcacatctgca
aattcagagtctgaagctgtacagaactctggcaacgtggttctggatctcgggtctaca
tggaaccctataacgtggttggatcttcttcatactgctaaagctatgttgcctgcaaga
gcctggaatagtttgtcccctgatctttatgctacattttgggggctcacactctatgat
ctttatgtccctagaaattgttatgaatctgaaattgcgaaacagcaggcttctcttaaa
gttctggaagagcagcctgataattcaatttctgcaataaccaaaaggaagaaagagaag
gaaagaattcaagataccatagatcgcctgactagtgaactccgtaaacatgaggaacat
gttgcatctgttcgtaaacgcttatcgcgtgagaaggacaaatggttgagttcttgtctt
gatactttaaagatcaacatggaattccttcagcgttgtatatttcctcgctgtactttc
agcatgccagatgctgtctattgtgccatgtttgtgcacactcttcattccctggggaca
ccattttttaacacagtcaaccacatggatgttcttatatgtagaaccttacagcctatg
atatgctgctgcactgaatctgaagttggtagactggggaagtttctctgtgagaccttg
aaaattgcttactattggaagagtgatgaatctatttatgagcgcgagtgcggaaacatg
ccaggatttgctgtctactataggtttccagatagccagcgggtccgatatggccagttt
gtgaaggtgcactggaaatggagtcaaaggatcacgagattattgggtcagtgtctggaa
tctccggagtacatggaaattcgaaacgctctcataatcttatcaagaatttctagtgtt
ttcccggttactaaaaagagtgggatgaacctcgaaagacgggtgtccaagatcaaaggt
gatgggagagaggacctcaaggtgttggcaacaagtgttggtgcttctttggctgctaga
aagccttcattggtttcggatgaagaattttgtatgggatacgttgaattaaagtcgaca
gcatcttcaaagccttcagccagtaattcaggagctatacagagtggtcctgccgttaat
aattctcaaaccgaacctgttggcggaagagcaggaaaccttgtctcccaacactcagaa
ttaataaactcagccagagaccacgtgtcaaaaaccaaacctgcagatgggaggttggaa
agagcagaaagtatctcaactgcaaaatctgaccaagggcatctaaaactgaaaggtgcc
tcattggtgaatggctcagatgctcaggcatccgtgccatcagctactttacaatctgga
acatcaaggcctatcgaaaatcaagtacaagtgaacgaaatctcaaatcgaacggcagat
gaaaatatgggaaaacttgctgcaaagaacacttcagaatctgagttgagggcccaagca
aaacggtctgttcctgctggggctaagccattgaaacaagatcttgcgaaggatgaaagt
agatctggaaaagcagctggagctactaatgcttcttccatcaccgcaaatggtagcacg
gtatcatcctcgggcaaaggttcagcttcgttaggtattgaatcaaaagtggaggctgga
tctgcaaagttttccaatacaaggatcccttcttcaaaggaagagggtgctgaggtttct
gatgcagcaaggcccccttcttctcgatttgttcattctcctagacatgatagttctgct
acactctcaaagtccagtgataaacttcaaaaaagaaccagccctgcagaagaaacagat
agacaaagtaaacgccggaaaggggaggctgaaatgaaagattttgagggtgaagctcgc
ttgtctgaccgagagaggtccgttgatgctagactgttggatcttgacaaatcaggaagc
gatgatagaagtgtatataaggccactgaaaaggcttcagatcggtctaaagataaagga
agtgaaagacatgataaggatcacagggaaagattggaccgtcctgataagtcacgcgga
gatgatttagttgagagatccagagataggtcaatggagagacatggaagggatcattca
gctgagaaattgcaagagaggggtacagataggagttttgatagactgcctgacaaatct
aaggatgagaaaggtaaagggcgttacagtgatatttctgctgaaaaatctcatgttgat
gatcgatatcacgggcaaagcttacctccaccaccgcccttacctcctcacattgttcct
caatctgttagttctggaagaagagacgaagattcagatagaaggactgcaactacaagg
catactcaaaggctttctccgagacatgatgagaaggaacgtagacgatctgaagaaaat
tcctcaatttctcaagatgattcaaagcgtagaagagaagatgattttcgagagagaaag
cgtgatgatcgtgaggggacctcggtaaaggtggaagagagggacagggagagggaaagg
gagagggagaaagaaagggagaaagccaacctcttgaaggaggattcagactcaattgca
gcttctaagaggcggaaacttaaacgagaacatctggcttctggggaagctggtgagtac
tcaccagttcaccctccccctcccctctctattaacttgtcccagtcatacgatggaaga
gataggggagaacggaaaggacccattgtcacgcgcacaggttacatggaggaatcaagt
ctgaggattcatggtaaagaagtatccagcaagatgacccgccgtgatacagacccgatg
tacgactgggacgacgataaaaggcaaagaggtgaacagaaacgaaggcatcggaagaat
tag
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integrated database retrieval system
