Rosa chinensis (China rose): 112201066
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Entry
112201066 CDS
T06020
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112201066
03036 Chromosome and associated proteins [BR:
rcn03036
]
112201066
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
112201066
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112201066
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
112201066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
112201066
NCBI-ProteinID:
XP_024197838
LinkDB
All DBs
Position
4:complement(66846381..66849991)
Genome browser
AA seq
635 aa
AA seq
DB search
MVDKQESQTSPPRNKWSRFIPFSSSPQPRPDGVWLNRYWLLLVIGSSAILWLTNKNRKPR
PPPETKGVASLKSHLSVSQHHLYPASPKTPTYFSGPSPSSPKHPPTYFSTPSPSPSSLKP
PAYTSKPSSSSTPSSPKPAPSIYFSLSSPSPSSPKRPPVFKSVLCPASSFSNNDDIIQQQ
RDRKKTAYVCVEEDSLPVFTIPEDIKTLIKNETVPKVLNCSLSPTTYKDYFAALLYSEDF
FLEKWSDFLLKAVTLELNEAEIHKNQKKQDKAFVAFELDSVPQNRPFLLSRDLVFARPVG
RSTAEPFQGIINRIVRSKTVLVEFEDAFYTHHHSNKKYDVSFSFNRVCLKRAHQAVKDAS
EDLFQNFLFPHCDSRGSIPTAPALLSTTCHKLDRDQRSAVGHILRIQGSPPYVVTGPDSV
PEGKSFAYFREPSRTGVVVSEAVYQLCQKSPEYRILICAPTNSCCDVLMRSLGKVIPEST
MFRANAAFREKEEVPEDILRSSLYKESCFSCPPIEELRKYRVIFSTFMSSFRLHDKGIAV
GHFSHIFLVDASSAIEPETLVALTNFADKTTSVIVTGKPGNSPRWVRADIARKKGLKISY
FERLCKLWPYRSLSPVFITQLDLNQNSGSDYQTAF
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggttgacaaacaagaatcgcaaacctcccccccaagaaacaaatggtctcgctttata
ccattttcatcatcccctcagcctcgtcctgatggggtttggcttaatcggtattggttg
ctgctagtcatcgggagttcagcaatattatggttgacaaacaagaatcgcaaacctcgc
ccccctccagaaacgaaaggggtcgcttccctgaaaagccacctcagcgtcagccaacat
catctatatccagcctcaccgaaaaccccaacatatttttctggaccatctccatcttcc
ccaaaacaccctccaacatatttttctacaccatctccgtctccatcttccctgaaaccc
ccagcatatacttctaaaccatcttcatcctcaactccatcttccccaaaacccgccccc
agcatatatttttctctatcatctccgtctccatcttccccaaagcgccctcctgtcttt
aagtcagttctatgcccagcctcctccttctcaaataatgatgatataattcaacaacaa
cgagacaggaagaaaacagcttacgtatgtgttgaagaggattcattacctgtattcacg
attcctgaggatatcaaaaccttgatcaagaacgaaactgtgcccaaagttctcaactgc
tctttgtctcccacaacgtacaaggattactttgctgctctgttatattctgaagatttc
ttcttggagaaatggagtgatttccttttgaaggctgtgacattggagttgaatgaagct
gaaattcataaaaatcagaaaaagcaagataaagcctttgtggcatttgagcttgattct
gttccccagaataggccattcctcttatcaagggacttggtctttgcacgaccagtgggt
aggagtactgctgagccctttcagggtatcattaatcgcattgtaaggagcaaaaccgtt
ttagttgaatttgaagatgccttttatactcatcatcattccaacaaaaagtatgatgtc
agcttctcattcaatagagtttgcttgaaaagagctcaccaagcagttaaagatgcatca
gaggacttgtttcagaatttcctcttccctcattgtgactcacgaggtagcattcctact
gcaccagctctgctttctactacctgtcataagctcgatcgagatcaacgttctgcagtt
ggacatatcttaaggattcagggctcacctccttatgtagtaactggtccggactctgta
cctgaaggcaaatcttttgcatattttagagaaccttcaagaactggagtagttgttagt
gaagcagtataccaattatgtcagaagtcgccagagtatcgcattcttatctgtgcgccc
actaacagctgctgcgatgtgctgatgagaagcttggggaaggtgattccagagtcgact
atgtttcgtgccaatgctgcattccgtgagaaagaagaggtacctgaggatatcctccgc
tcatccctttacaaagagtcctgtttttcttgtcctccaatagaggaactccggaaatac
agggtgattttttcgactttcatgagtagctttcgactacatgataaaggcatagctgtt
ggacattttagccatatttttctggtggatgcttcatccgctattgaaccggaaacattg
gtcgccctgactaactttgctgacaagactactagtgttatagttactggtaaacctgga
aacagtccgcgctgggttcgcgctgacattgcaaggaaaaagggactcaagatttcatac
tttgaaagactctgtaagctctggccctatagaagcctcagtccagtgttcatcacacaa
ttggacctgaaccaaaactctggctcagactaccaaacagctttctga
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