Rosa chinensis (China rose): 112201541
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Entry
112201541 CDS
T06020
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rcn03016
]
112201541
Enzymes [BR:
rcn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
112201541
Transfer RNA biogenesis [BR:
rcn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
112201541
Prokaryotic type
112201541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
112201541
NCBI-ProteinID:
XP_024198208
LinkDB
All DBs
Position
5:complement(78198561..78201941)
Genome browser
AA seq
512 aa
AA seq
DB search
MALSSLRLPVSLWLPKHPNQSFHFSNPKIPSRLNLIYCCSPSAATAQQTLTRTEKWQPVR
KKKVVLRVGYVGTDYRGLQMQRDDPSISTIEKELETAIFKAGGIRESNFGNLNKIAWARS
SRTDKGVHSLATMISLKMEIPENAWDGDPYGIALVNHINCYLPHNIKIFSVLPAQRSFDP
RKECNLRMYSYLLPADVIGIKSHFSTAEIDDHIADFNDILNAFEGEHPFHNYTVRSKYRK
KLSGKKSPIYRNMSKTERSTVEASASELEGSDDEDEFEGENTTETEVLNQNSFLSSNGNE
NLLKACKKQEDVLKEKSTDSVIRAKWLYEPDESDRIGASHFRKIFRCSCGKLEKSLAHEY
VELSIWGESFMLHQIRKMVGTAVAIKRKLLPRDILTLSLAKFSRVILPLAPSEVLILRGN
RFSIRERPGNVTRPEMIAMVESEEIIKQVDEFFTSVMLPQVAKFLEPSGYPWQEWIENLD
RNTGIPDIELDELRNAWKVWKERFESDASILK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtcttcactgcgactcccggtctcgctttggcttccaaaacacccaaaccag
agcttccatttttcaaacccaaaaataccctcaagattgaaccttatttactgctgctcc
ccctccgctgccactgctcaacaaaccttaacccgcactgaaaaatggcaacccgttcga
aagaagaaagtggttctccgggtcgggtatgtgggcaccgattaccgaggtctgcaaatg
caacgagatgacccttcaatatctactattgaaaaggaactggaaactgccatattcaag
gccggtggtattcgcgagagtaatttcgggaacctgaacaagattgcgtgggccagaagc
agcagaaccgataagggagttcactccttggcgacaatgatatcattgaaaatggaaatc
cctgaaaatgcgtgggacggagacccgtatggcattgctcttgtgaatcacatcaattgt
taccttcctcataatatcaaaatttttagtgttttacctgcacagaggagctttgatccc
agaaaggagtgtaatctccgtatgtattcatacctccttcctgctgatgttattggaatc
aaaagtcactttagcacagctgaaattgatgatcacattgcagacttcaacgatatacta
aatgctttcgagggtgaacatccttttcataactatacagtacgatctaaatacaggaaa
aaactttctgggaagaaatcacctatataccgcaatatgtcaaaaacagaaagatcaact
gttgaggcatcagcctccgagcttgagggaagtgacgatgaagatgagttcgagggagaa
aatacaacagaaactgaggtactgaaccaaaattctttcctgtccagcaatgggaatgaa
aacttactgaaagcatgcaagaagcaggaagatgttctgaaggagaaaagtactgattca
gttatccgtgcaaaatggttatacgaacctgatgagagcgatagaatcggtgcttctcat
ttcagaaagatatttcgctgttcttgtggaaagcttgaaaaatcgctggcacatgagtat
gttgagctctccatatggggagagtctttcatgttacatcaaattcgcaaaatggttgga
actgctgtggccataaagcgcaagttactcccaagagatattctgacattatcactggcc
aagttctcacgggtaatcctaccccttgctccatctgaagttttgatcttaagaggaaac
agattttcaattagagaaagacctggaaatgtaacaaggcctgaaatgattgcaatggtt
gaatcagaagaaattatcaaacaggttgatgagttcttcacatctgtaatgttgcctcaa
gttgcaaagttcttagaaccttcaggatatccttggcaagaatggattgaaaacttggat
agaaacacaggtattccagatatagaattggatgaacttagaaatgcttggaaagtgtgg
aaggaaaggtttgagagtgatgcatcaatcctgaagtaa
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