Rosa chinensis (China rose): 112201654
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Entry
112201654 CDS
T06020
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112201654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112201654
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112201654
Complex C
U5 SnRNP specific factors
112201654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
Suf
TPR_19
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_2
TPR_8
ubiquitin
ARM_TT21_C
TPR_1
FAT
PAP_PilO
Motif
Other DBs
NCBI-GeneID:
112201654
NCBI-ProteinID:
XP_024198334
LinkDB
All DBs
Position
5:complement(51573641..51580758)
Genome browser
AA seq
1025 aa
AA seq
DB search
MVFITSPNHRTLNLNLNPKTTTLETLKLQIQQNSHIPISQQRLFISQSLQILTQPDSTLL
SDLGISPLSTLTLHIPLFGGTQPPAVPKPRLDFLNSKPPANYVAGLGRGATGFTTRSDIG
PARAAPDLPDRSATTIGGAAGAAPPGVGRGRGKPEEEEEDDGEEKGYDENQKFDEFEGND
VGLFASAEYDDEDKEADAVWEAIEQRMDSRRKDRREARLKQEIEKYRASNPKITEQFANL
KRQLYTVSAEEWDRIPDIGDYSARNKKRKFESFVPVPDTLFEKARQEQEHVTALDPKSRA
ATGTETPWSQTPVTDLTAVGDGRSTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITS
DAEISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKIQAARQLIQKGCEECPKSED
VWLEACRLASPDGAKAVIAAGVKSIPNSVKLWMQAAKLEHDDSNKSRVLRKGLEHIPDSV
RLWKAVVELANEEDARLLLQRAVECCPLHIELWLALARLETYENARKVLNKAREKLSKEP
AIWITAAKLEEANGNTSTVGKIIERGIRALQREGLVIDREAWMKEAEAAERAGSVATCQA
IIRNTIGIGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLE
KSHGTRESLDALLRKAVTYRPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEI
WLAAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNLDEERKLLAEGLKR
FPSFFKLWLMLGQLEERLNHLEKAKEAYDSGLKHCSNSIPLWLSLANLEEKMNGLSKARA
VLTMARKKNPQNPELWLAAVRAELRHGNKREADILMAKALQECSNSGILWAASIEMVPRP
QRKTKSMDALKKCDHDPHVIAAVAKLFWLDRKVDKARTWLNRAVTLAPDIGDFWALYYKF
ELQNGTDENQKDVLKRCIAAEPKHGEKWQPISKAVENSHQPTEAILKKVVVALGKEESAA
ENNRQ
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcatcacatctccgaaccacagaactctaaacctgaatctcaacccaaaaacc
accaccctcgaaaccctcaagcttcaaatccagcaaaactcccacatccccatctcccag
cagcgcctcttcatctcccaaagcctccaaatcctaacccaacccgactccaccctcctc
tccgacctcggcatctcccccctctctaccctaaccctccacatccccttattcggcggc
acccaaccccccgccgtccccaaaccccgcctcgacttcctcaactccaagcctcccgcc
aattatgtcgccggcctcggccgtggcgccaccggattcaccacgcggtccgatatcggg
ccggcccgcgccgctcccgacttgcccgatcggtcggcgacgaccatcggcggggctgcc
ggggcggctccgcctggggtgggccgcgggcgcgggaagccggaggaagaggaggaagac
gacggcgaggagaagggttacgatgagaatcagaaattcgatgagttcgaaggaaacgac
gtcggtttgttcgcgtcggcggagtacgacgacgaggataaggaggccgatgcggtgtgg
gaagccattgagcagagaatggactcgaggagaaaggataggagagaagcaaggttgaaa
caagagattgagaagtacagagcttcgaatccgaaaatcacagagcagtttgcgaatctg
aagaggcagctgtatacagtttcggctgaggaatgggatcgcataccggacattggggat
tactcagccaggaataagaagaggaagtttgagagctttgtgccggtgcccgatactctt
ttcgagaaggctaggcaggaacaggagcatgttactgcattggaccccaagagtagggcg
gccaccggtacagagacgccgtggtcgcaaacgccggttacggatttgactgcagtgggg
gatggtagaagtactgtgttgtctttgaagttagataggctttcggattctgtttctggg
ttgacagttgtggaccctaagggttatctcactgatcttaagagtatgaagattaccagt
gatgcggagatttcagatataaagaaggctagattgctgttaaagagtgtgacgcagact
aatccgaagcatccaccgggttggattgcggctgcgaggttggaggaagtggcggggaag
attcaggcagcaaggcaattgatccagaaagggtgtgaggaatgtcccaagagtgaggat
gtgtggttggaggcatgtaggcttgccagtcctgacggagccaaggctgtgattgctgct
ggagtcaagtctataccaaattcagtcaagctgtggatgcaggcggcgaaattggagcat
gatgactcgaataagagtagggtgttgaggaaagggttggaacacattcctgattctgtt
aggctgtggaaggcggtggtggagctggcaaatgaggaggatgccagacttttgcttcag
agggctgtggagtgttgtcccttgcacattgagttgtggcttgcactagcgagattggaa
acttatgaaaatgccaggaaggtccttaacaaggcccgcgagaagctttcgaaggagcct
gccatttggattactgcagcaaagttggaagaagctaatgggaatacatcaacagttggg
aagattattgaaaggggtataagggctttgcaaagagaggggttggtgattgatagagaa
gcatggatgaaggaggctgaagctgctgagcgtgcagggtctgtggcaacttgccaagcc
attattcggaacacaattgggattggtgtggaggaagaagataggaagaggacatgggtt
gctgatgcagaggagtgcaagaaacgtggttccattgaaacagccagagctatctatgcg
catgcactcactgtcttcttgactaagaagagcatatggcttaaagcagcacagcttgaa
aagagccatgggacaagggaatctcttgatgccctgcttcggaaagcagttacctaccga
ccacaggctgaagtcttatggcttatgggtgctaaggagaagtggcttgctggggacgtg
cctgctgcccgtgcaatcctccaagaagcttatgctgccattccgaattctgaagaaatt
tggcttgctgcgtttaagcttgaatttgagaatcatgaacctgagagagctaggatgctt
cttgccaaagcccgagaaaggggaggaacagagagagtatggatgaaatcagcaatcgtt
gaaagagaattagggaacctcgatgaggagaggaagttgcttgctgaaggattgaagcgc
ttcccttcgttctttaaattgtggttgatgcttggacagctagaggaacggcttaaccat
ttggaaaaagccaaggaggcttatgactcgggtcttaagcactgctccaattctatacca
ctctggctttctcttgcaaatcttgaagagaagatgaatgggctgagtaaagctcgtgca
gttcttacgatggccaggaagaaaaatcctcagaaccctgaactgtggcttgctgctgtt
cgagctgaattgaggcatggtaataagagggaagctgatattttgatggcaaaggccttg
caggagtgttccaatagtggtatcttgtgggcagcttctattgagatggtaccccgtccc
caaaggaagaccaaaagtatggatgctctcaagaaatgtgatcacgatccccatgtcatt
gctgctgtggccaagttattctggctcgacaggaaggttgacaaggctaggacttggctc
aacagggcagtgacacttgccccagatattggagatttctgggctttatactacaaattt
gaacttcagaatgggactgacgagaaccagaaggatgtactgaaaagatgcattgctgca
gaaccaaagcatggtgaaaaatggcaacctatttcgaaggcagtggagaactctcaccaa
ccaactgaagctatcttgaagaaggtggttgttgcccttggcaaggaagagagtgcagct
gaaaataatagacagtag
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