Rosa chinensis (China rose): 112202035
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Entry
112202035 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112202035
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rcn01001
]
112202035
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112202035
03036 Chromosome and associated proteins [BR:
rcn03036
]
112202035
Enzymes [BR:
rcn01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
112202035
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
112202035
Protein kinases [BR:
rcn01001
]
Serine/threonine kinases: Other
TAF1 family
112202035
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112202035
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
112202035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
ubiquitin
Rad60-SLD
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
112202035
NCBI-ProteinID:
XP_040363083
LinkDB
All DBs
Position
5:9088185..9095215
Genome browser
AA seq
1723 aa
AA seq
DB search
MGCNSDGGSQVFTGEDDDEEYEEDGRGSRFLGFMFGNVDDSGDLDVDYLDEDAKKHFAVL
SEKLGPAFTDMDMSVKLPRTLSDAVEQDYDEKAENAVNYFDIDEDFEGPEIEGATEEDHL
LPRDEYLSAKVSVDKIREVEHEVVENYDEESEQEKEQEVVEQDVRISPPLPVLCIEDGEV
ILRFSEIFGTHVKEAVKRNHRYSVCKSMHKSMDFTDIVEEDEEAFLKGTSEGFTALKEAD
GVKHNISELNDDDLEFAKFRVHKEATSFAVLDGPGKGTYLFAAPMKEDLDVDLCVERQSP
SCPTFYPLDQQDWEDGIIWDKSPVMSDNAVESCEMSGPDHTSVDSETESDSGSQNIQLES
QKESDEKRHDFMLFSRSSLLEPFGSRNSAGPLCVPVSESRYHPQLLRLESRFEVDDQANG
RMENVDQKLHKRDAVRQFSKLTSHNRDMLEGSWLDQIIWDPNIRIRKPKLILDLEDEQML
FEILDNKDSEHLKLHSGATIVTTPLKSSNEDSLDLPSHRAQFCWRYVANDKHYANRKTSY
QLQSNSKRRTAQSIKIYHSQPALRLQTMKLKLSNKEVANFHRPKALWYPCDDEKAVKELG
KLPTQGPMKIIIKSLGGKGSKLHVDHEETVFSVKAKASKKLDFKSSETVRMFYKGKELED
DKSLAAQNVQRNSLLYLVRTNIYLLPRSQKLPGENKSLRPPGAFKKKSDLSAKDGHVFLV
EYCEERPLLLSNIGMGARLCTYYQNSAPDDQNGSLLHNENSSLGHVISLNPADKSPFLGD
IKAGCCQSSLETNMYRAPLFSHKVPSTDYLLVRSAKGKLSIRRIDKLNVVGQQEPLMKVM
SPGTKNLKNYMLNRLLVYMCREFRAAEERHVPPCICVDELRAQFPYLSDPFIKNKVKELV
NLPKGSSGHWVKKSNFTIFSEDELRNMVKPEEVCAYESMQAGLYRLKHLRITQTYPSVMS
SAMSHLHDEGNTLAAACHIKRELQTTPWNLSCNFVACTMGKENIERLEISGLGDPSGRGL
GFSYVRAAPKSSMPNAVGKKNCATGRGRSDSFSRERCQEIWEQQVHCLSAVGSDENESDS
EGNYSDLDSFAGSLENLLDAEECEKGLGGDHEFECDKEDDVKGLVMRRLLSLNPAEESED
EAAEAAELCRLLMGDETERKKKKTTRVLEEARLLPGSRTSFAFENADRVKQNIVTAQFDG
SYTPKENPIGDSKVMENLLKRSKTGELEGMRENGTTPMHKKLNASGNGVKMFGEKKPVRE
NFVCGACGQHGHMRTNKNCPXFGKDLKVHIETPDLENVLGRSIPLNSSSQFQQKTTTKKL
IPKTVIDVEGSEVENLGLTSKVVPLTLKVAFGEKFPDKQAPGETESYQNPLTSDLETGNP
AVKVSKIIISNKTKPGGVSVESHKPPIGIWPPTDIDRGHVKSQKPLPTIVIRPPATTVRD
HVESQKPSVAKLPLVEAHKEQHHQKRHEKLNSMYFPTEAAKKKARDDRRLGEEQEKRRIE
ESARRLYDKEIRMAKERERRAELKKYEAAIKQEREEELQKVKKNKMMHRSPQINNDYLED
SRTRRFGKRMPERDQGAKRRPTVDLGSYGGGYASTTKRHKGGEVGLANILERIVESLKDR
IEISYLFLKPVSKKEAPDYRDIIEHPMDLSTIKVKVRNMEYKSREQFRQDVRQIAFNAHK
YNDGRNPDIPPLADELLNFCDYMLVENEESLTEAEAGIEYTDM
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgggttgtaattcagatggtgggtcccaagtgtttacgggtgaggatgatgatgaagaa
tatgaggaggatggtaggggtagtcggtttcttgggtttatgtttggtaatgtggatgac
tcgggtgatcttgatgttgattaccttgatgaggatgcaaagaagcattttgctgtactt
tccgagaagcttggtcctgctttcacggatatggacatgtcagtgaagttaccaaggaca
ttaagcgatgcggtggagcaagattatgatgagaaggctgagaatgctgtgaattatttt
gacattgatgaggattttgagggtccggagattgaaggtgctactgaggaggaccatctt
ttgccgagagatgaatacctttctgctaaagtttcagtggataaaattcgagaagtggaa
catgaggtggttgaaaattatgatgaggagagtgaacaggaaaaggaacaagaggtggtt
gaacaggatgttagaatttccccaccgctgccagttctatgcatagaagatggagaggtg
atcctaagattctcagaaatctttggcactcatgtaaaggaggcagttaaaagaaaccat
aggtactctgtttgcaaaagtatgcataaatccatggattttacggatattgttgaagag
gatgaagaggcatttctcaaaggaactagtgaaggatttacagctttgaaagaagctgat
ggagtgaaacataacatctcagaattgaatgatgatgatttggaatttgcaaaatttcgt
gttcacaaagaggctacctcatttgctgtgctggatgggccaggaaagggcacgtacctt
tttgcggcaccaatgaaagaagatctagatgtggatctttgtgtggaaaggcagtcacct
tcgtgtcctacattttaccctcttgatcaacaagactgggaagatggaattatttgggac
aagtctcctgtaatgagtgacaatgctgttgagagttgtgaaatgtcaggacctgaccac
acctcagttgatagtgaaacagaatctgatagtgggtcgcaaaatattcagttagagtcc
caaaaagagtctgatgagaaaaggcatgattttatgctatttagccggtctagtctgttg
gagccttttggctcaagaaattcagcaggacctttatgtgttcctgtatcggaaagcaga
taccatccccaactcttaaggctagaatctcgatttgaagtggatgaccaggcaaatggt
agaatggagaatgtcgaccagaagcttcataagagagatgctgtgaggcaattcagcaag
cttacctcacataacagagacatgctggaaggatcatggttagaccagatcatatgggac
ccaaacatacgtattaggaagccaaagcttatccttgatcttgaagatgagcaaatgctc
tttgagattttggataacaaggatagtgaacatcttaagcttcattcaggggccacgatt
gtaactacccctctaaagtcaagcaatgaggattctttggatttgcccagtcatagagct
cagttttgttggcgatatgtagctaatgacaagcactatgcaaacaggaaaacatcttat
caactacaatcgaattctaaaagacgcactgctcaaagcataaagatttatcactcacaa
cctgcacttcggctacagactatgaagctgaagttaagcaataaggaggttgctaatttt
catcgaccaaaggctttatggtatccctgcgacgatgaaaaagctgtaaaagaactaggg
aagctgcctactcaaggaccaatgaaaattattataaagagcttgggtggcaaaggcagt
aagcttcatgttgatcatgaggaaactgtcttttctgtcaaagcaaaagcttcaaaaaag
ctagattttaagtcatctgaaacagtgaggatgttttataaagggaaggaacttgaagat
gataaatctctagctgctcaaaatgttcagcggaactctttgctttatctggtccgtaca
aatatatatttgttgccaaggtcgcaaaaacttcctggtgagaataaatcgttgcgtcct
cctggagcatttaagaagaaatctgacctttcagctaaagatggtcatgtctttctagta
gagtattgtgaggaaagacctttacttctgagcaatattggtatgggtgcaagattgtgc
acttattatcaaaattcagccccagatgatcaaaatggatctttgttgcacaatgaaaac
agcagcttgggtcatgtcatttcgctaaaccctgctgataaatcaccttttcttggagat
ataaaagctggttgctgtcagtcatctcttgagacaaacatgtatagagcacctcttttt
tctcataaggtgccatcaactgattatctgttagttcgttctgcaaagggaaagctttca
attagacgcattgacaagcttaatgttgtagggcaacaggaacctctcatgaaggtaatg
tctcctggaactaagaatctgaaaaattacatgcttaacaggctcctagtctacatgtgc
cgtgagttccgtgctgccgaagagcgccatgtccctccttgtatttgtgtagatgagtta
cgtgcacaatttccttacctatctgatccctttatcaaaaacaaagtgaaggaacttgtg
aatttgccgaagggatcaagtggacattgggttaagaagagcaatttcacgattttctca
gaggatgaattaagaaatatggtgaaaccagaagaggtgtgtgcctatgaaagcatgcaa
gctggtctttatcggctcaaacatttacgaattactcaaacttatccttctgtcatgtca
tctgcaatgagtcatctccacgacgaaggtaatactctggctgctgcatgtcacatcaaa
agggaactacagacgactccatggaatttgagttgcaattttgtagcctgtacaatggga
aaagaaaatattgagcgtttagaaatatctggccttggtgatccatctggccggggacta
ggttttagttatgttcgcgctgctccaaaatcatcaatgcccaatgcagtgggaaagaaa
aactgtgctactggtagaggacgttcagattctttcagcagggagaggtgtcaggaaatt
tgggaacagcaagttcattgtctttcagcagtaggcagtgatgagaatgagagtgattct
gaaggaaattatagtgatctggattcctttgctgggagtttagaaaatctgcttgatgca
gaagaatgtgaaaaggggttagggggtgaccatgaatttgagtgtgacaaagaagacgac
gttaaagggctcgtaatgagaaggctcctgtccttgaatccagcagaggaaagtgaagat
gaagcagctgaagcagctgagttatgccggttgcttatgggtgatgaaactgagaggaag
aaaaagaaaacaacaagagttttggaggaagctaggctgcttccaggctcacgaacaagt
tttgcttttgagaatgcagatagggtaaagcaaaacattgttacagcacaatttgatggt
tcctatactcctaaagagaatccaattggagacagcaaagtgatggaaaatcttcttaaa
agaagcaagactggagaattagaagggatgagagagaatggtactacacctatgcataag
aaactaaacgcatcaggaaatggtgtcaagatgtttggtgagaagaagccagtaagagag
aattttgtctgtggagcatgtggtcagcatggacacatgaggacaaacaagaactgcccc
tagtttggaaaagatctgaaagtgcacattgaaactccagatctggagaatgtacttgga
aggtccattcctctgaactcatctagtcagtttcagcagaaaactacaacaaagaagctg
ataccaaagactgtaattgatgttgaaggttctgaggttgaaaaccttggtctgacctca
aaggttgttccattgacactcaaagttgcgtttggtgaaaagtttcctgataaacaggct
cctggagaaacagagagttatcagaatccactcacatctgatcttgaaactgggaatccc
gctgttaaggttagtaaaataataatttctaacaagacaaaacctggaggggtatcagtt
gaatctcataaaccccctattgggatatggcctcccacagatatagataggggtcatgtt
aagtcacaaaagccattgccaactatagtcatacggcctccagcaaccacagttagagat
catgtggaatctcaaaagccctctgttgctaaactgccattagttgaagctcacaaagag
caacatcatcagaaaagacatgagaagctgaatagcatgtattttcctactgaagcagca
aaaaagaaagcaagagatgatagaagattgggggaggagcaagagaaacgaagaattgaa
gagagtgccaggaggctgtatgacaaggaaattaggatggcaaaggagcgagaaagacgt
gcagagctcaaaaaatatgaagcagccatcaaacaagagagagaggaagaactccagaaa
gtgaagaagaataaaatgatgcatagaagtccacagataaacaatgactatttagaggac
tcgcggacaagaagatttggtaaaaggatgccagaaagagatcagggggccaaaaggagg
ccaactgttgatttgggaagttatggtggaggttatgcctcaactactaagcgtcataaa
ggaggagaggttggtttggcaaacatcttggagcgcattgtagagtccctcaaagatcga
attgaaatctcgtatctttttctaaaaccagtatccaaaaaggaagctcctgattaccgg
gacatcatagagcacccaatggatctgtcgacaatcaaggtgaaggttcggaatatggag
tacaagagccgggagcaattcagacaggatgtgcggcagattgcctttaatgcgcataaa
tataatgatgggcgtaacccggatatccctccacttgcagatgagcttttaaacttttgt
gactatatgttggttgagaatgaagaaagcttgactgaagcggaagcaggcattgaatat
acagatatgtag
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integrated database retrieval system
