Rosa chinensis (China rose): 112202111
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Entry
112202111 CDS
T06020
Name
(RefSeq) endonuclease MutS2 isoform X1
KO
K07456
DNA mismatch repair protein MutS2
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112202111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112202111
DNA repair and recombination proteins [BR:
rcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112202111
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
Smr
MSSS
Motif
Other DBs
NCBI-GeneID:
112202111
NCBI-ProteinID:
XP_024198795
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Position
5:5239070..5242927
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AA seq
929 aa
AA seq
DB search
MQKPMLTSLTPFNLTFFLSSPKSSYLFPKPTATAAVTNFSLSHSLQSETLEILEWPSVCN
HLSALASTSMGFSAAQKAQIPFGKSKSESQKLLDQTAAAVSAIAAIGSPPPDLLSIEDVS
EIVNDAVLGKLLTINELCAVRRTLIAAKALFEKLKALADSHRYLPLLEVLEGCDFLVKLE
RTIGLCIDCNLSEILDTASEDLEIIRFEKKRNMEKLDALLKEMSSKIFKAGGIDSPLVTK
RRARMCVGVRARYKYLVPDGVVLDASSSGATYFMEPSEAVELNNMEVRLSNAEKAEEIGI
LSFLTSEIAKSEGEIVYLLDKIVEVDLAFARAVYARWMNGVCPIFSSKDGKDLENGGAEI
GISIDIEGIQHPLLLESSLSSLSDALASSSRSALSSKDGNDVKMVYRSLSSGVSDFPVPI
DIKIGYGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMYLPARSQPKLPWFDLVLADIG
DQQSLEQSLSTFSGHISRICNILEVTSKESLVLIDEIGSGTDPSEGVALSTSILQYLKDR
VNLAVVTTHYADLSLLKEKDHQFENAAMEFSPETLQPTYRVLWGSIGDSNALSIAKSIGF
NQQIIERAQDWVERLRPEKQQERKGLLHRSLIEERNRLEAQAKMAASLHSETRDIYHELL
RPRLNFATPTQFQPIISIQDEAEDLDVRKRALMAKETLQVREEVKIVKSQLEAVLQEFDN
RLKTAGADQLNLLIKKSEAVIASIIEAHSPEDGFLVNETSETSYTPRFGEQVYLKGLRDK
IATVVEAPGDDGTVLVQYGKIKVRLKNNEIRAIPSSDKNAVTSSVPRLKQRVWRSRTVEN
KDAEVSYSPAVQTSKNTVDLRGMRAEEASYNLDMAIATRESQSVLFVVHGMGTGVVKERA
LELLKKHPRVAKYEAESPMNYGCTVAYIK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaccaatgctcacctccctcactccattcaacctaaccttcttcctctcctcc
ccaaaatcttcatacctcttccccaaacccaccgccaccgccgccgtcactaacttctcc
ctctcccattccctccaatccgaaaccctcgaaatcctcgaatggccctccgtctgcaac
cacctctccgctctcgcctccacctccatgggcttctccgccgcgcagaaggcccaaatt
cccttcggaaaatccaagtccgagagccagaagcttctagatcaaaccgccgccgcggtc
tccgccatcgcagcgatcggttctccgccgcccgatctcctctccatcgaggacgtctcc
gagatcgtaaacgacgccgttttgggcaaattgctcactatcaacgagctctgcgctgtg
cgtagaacactcatagccgcaaaggccttgttcgagaagctgaaggccttagcagattct
cataggtacttgccattgcttgaagtacttgagggttgtgattttctagtgaagctggag
agaactatagggttgtgcatagactgcaatctttcggagattctcgacacggctagtgaa
gacttggagatcattaggttcgaaaagaagaggaacatggagaaattggatgctttgttg
aaggaaatgtcgtctaagatatttaaggccggggggattgacagtcctttggtgacgaag
cgcagggcgaggatgtgtgtgggtgttagagctaggtacaagtatttggttccagatggg
gtggtgttggatgctagtagttctggtgcgacgtacttcatggagccgagtgaggcggtg
gagttgaataacatggaagtgaggctttcgaatgctgagaaggctgaggaaataggcatt
ttgagcttccttacatcagaaattgcaaaatcagaaggggagatagtgtatttgttagat
aagattgtagaagttgatcttgcttttgctagagctgtgtatgctcggtggatgaatggg
gtatgcccaattttcagttctaaggatggcaaggatttagagaatggtggagctgaaatt
gggatatcgatagatattgaaggaatacaacatcctttgctccttgagtcatctcttagt
agtttgtctgatgcccttgcatccagttctagaagcgcactttcctccaaagacggaaat
gatgtaaaaatggtctatcgaagtttatctagtggtgtatctgattttccagtgccaata
gatatcaaaattggatatggaaccagagtggttgtaatctcagggcctaatactggcggg
aaaacagcttccatgaaaactttgggcctggcatctcttatgtcgaaagctggaatgtat
ctgcctgctagaagccagccaaagcttccatggtttgatcttgttctagctgatattgga
gatcaacagtctcttgagcaaagcctctcaacatttagtgggcacatatcacggatctgt
aatattttggaagtcacctcaaaagaatcacttgtcctcattgatgaaattggtagtgga
accgatccttcagaaggtgtggctctttctaccagcattttgcaatatctcaaagatcgc
gttaacttagctgttgtgactactcattacgcggatttaagtcttctaaaagaaaaggat
caccagtttgaaaatgcagccatggagttttctccagaaaccttacaaccaacttatcgg
gtcctatggggaagtattggtgactcaaatgcattgagtattgctaaatcaattggtttt
aatcaacaaataattgaacgcgcacaagattgggtggaaagattaaggccagaaaagcag
caagagcgtaaaggtttgctacatcggtcattaatagaggaaagaaacagactggaagct
caggctaagatggcagcgtctcttcattcagaaaccagggatatttatcatgagttgtta
cggccaagattaaattttgcaactccaactcaattccagccaattatatcaatccaagat
gaggcagaagatcttgacgtgcgcaagagagctcttatggcaaaggaaaccctacaggtt
cgggaagaagtgaagattgtcaaatctcaattggaagctgtgcttcaggagtttgataac
cgactcaaaactgctggtgctgatcagttgaatttgctgataaagaaatcagaagctgta
attgcatctattattgaggctcacagtcctgaagatggtttcttggtaaatgagacatct
gaaacttcatacacacctcgatttggggaacaagtctatttgaagggactcagagataag
atagctaccgtagttgaagcacctggagatgatgggacagtgctcgtacaatatggtaaa
attaaggttaggttgaagaataatgagatcagagctattcctagtagtgataagaatgcc
gtgactagttctgtcccacgtttgaagcagcgggtttggcggagccgtactgtggaaaac
aaagatgcggaggtttcttatagtccagcggtacaaacatcaaagaacacagtggatctt
cgtggcatgagggcggaggaagcttcttacaatctggacatggccatcgctactagagag
tctcagtcagttctttttgttgtacatgggatgggcacaggggttgtcaaagagcgagca
cttgagcttttaaagaaacatccacgagtagccaagtatgaagcggaaagtccaatgaat
tatggttgtacagttgcttacatcaagtga
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