Rosa chinensis (China rose): 112202170
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Entry
112202170 CDS
T06020
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112202170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112202170
04121 Ubiquitin system [BR:
rcn04121
]
112202170
03036 Chromosome and associated proteins [BR:
rcn03036
]
112202170
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112202170
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112202170
Ubiquitin system [BR:
rcn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112202170
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112202170
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112202170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
zf-HC5HC2H_2
zf-RING_5
RTT107_BRCT_5
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
112202170
NCBI-ProteinID:
XP_040363081
LinkDB
All DBs
Position
5:10451050..10457427
Genome browser
AA seq
1090 aa
AA seq
DB search
MGNLAHLEKMGRELKCPICLSLFSSAVSLNCNHVFCNSCIVKSMKSGSNCPVCKIPYQRR
EVRPAPHMDNLVSIYKSMEDASGVNMFMTQSAPSAKSSDGKQQAEGENPDDQDPPKLSQN
RAGNGRTVRGKRSWKTKSNLKNSESVSVKPSFPTKKRVQVPQCPPSETPTRPKQLPGGFI
DEKSKEESTTLKEKPVLNEKGEPVLSPFFWLSDKDAENLSQPSSGDQLNDIPSPNVPTFS
DIKESDDEDCSRLSPLGKVQGKSSNVADFFDSEMFEWTQRPCSPELFASPSKMQVVDSDQ
IDRIQVKELKEALLNKKIGEQVTAEKERSGNSRQSSGNLILLPDLPHDKTEDANHQFLCK
PSNKRGRQARKIAKRKCATSHMDLVENSSANLKGSEDFYQEHGSKNSDSSMAKAGKRNKK
AHPSRLATKPTCESVCILSIGAERQNEGSAEKGLTELPTSLEKNEGSDEAFTQEKAKKIC
TEINAKNQCRSVRSRKQKVVSMPNILDEVSEIKKQANKNTTTESSHVTVPTDDNRKVSNV
KNVSTKLASEAKSSDRELKFNKRVRVSSGDDSKDKEVSEIKKQANKNAPTELPLRNLPTN
VSRELSGVRKCAREAKSCDRKTTKKLRVSFDDNSKDEAVIEIREGQHNVNENGNQPSEKS
KGNSNARIFTDRSSMQKLPTLKNDVVLRRCDAVTSNIQCAFCLSSEESEASGEMVHYYNG
KPVAADHNGGSKVIHSHRNCTEWAPNVYFEDDIAMNLEAELTRSRRIKCCCCGIKGASLG
CYEKSCRKSFHVSCAKMTPECRWDSDNFVMLCPIHASSKLPNESSESEARRKKSNPRKQP
GADHNKVAVKQDSNICQDLKFCGSSKKLVLCCSTLTNAEQEYVAEFEKLSGVTVLKKWDS
SITHIVAPIDENGACRRTLKVLLGILEGKWILSMGWIKACMEAMKLVNEEPYEISVDIYG
IRDGPRLGRLRLQNKEPKLFDGLKFYFMGDFVPSYKGYLQDLVIAAGGTVLHRKPVPESQ
KGSSGSPLECRTFIIFSLELPDQCHPSKKGTIFNQRQADAKSLASSAEANVVSNSWILNS
VAACKLQNLS
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatctggcgcacctcgagaaaatgggcagagaactcaaatgcccaatatgtttg
agtctgtttagttcagccgtttcgctgaattgcaatcatgtcttctgcaactcttgtatt
gtgaaatcaatgaaatctggttccaattgccctgtttgtaagatcccatatcagcggaga
gaggttcgccctgctcctcatatggacaatttggttagtatttacaaaagcatggaggat
gcttcgggtgttaacatgtttatgactcaaagtgcgccgtcagctaaatcatcagatgga
aagcagcaagctgaaggtgagaaccctgatgatcaagatcctcctaaactttctcagaat
agagctgggaacgggagaaccgtaagagggaaaagatcatggaaaactaaatccaatcta
aagaactctgaatctgtttcggttaagccttcatttccaaccaagaaaagggttcaggtt
ccacaatgtcctccttcagaaacccctacacggcctaaacagttaccgggtggttttatt
gatgaaaagtcaaaggaggagtctacaacactaaaggagaagcctgttttaaatgaaaag
ggagaaccggtgctttcacctttcttttggttgagtgacaaagatgctgaaaatttgagt
cagccttctagtggtgatcagcttaatgatattccatctcccaatgttcctactttcagt
gatatcaaggagtcagatgatgaagactgttctagattgagcccactgggcaaagtgcag
gggaaatcttccaatgttgctgatttttttgatagtgaaatgttcgaatggacgcaaagg
ccgtgctcccctgagctctttgcaagtccttctaagatgcaggttgtggatagtgatcaa
attgatagaattcaagtgaaggaactaaaagaagctttactaaacaagaaaataggtgaa
caagtcactgctgaaaaagaaaggtccggaaattctagacagagtagtggaaacttaatc
ttgctgcctgatcttccacatgataaaactgaagatgctaatcatcaatttctttgcaaa
ccatctaacaagagaggcagacaagcaagaaaaatagctaaaagaaagtgtgctacaagt
catatggacctggttgagaatagtagtgctaatttgaagggttctgaagatttttatcaa
gaacacggctccaagaatagtgacagttctatggccaaggctggcaaaaggaataagaaa
gctcatccgtctcggctcgcaactaagccaacatgtgaaagtgtttgcatcctctctatt
ggtgctgaaaggcagaatgaaggcagtgctgagaaggggttaactgaattacctacttca
ctagaaaagaatgaaggcagtgatgaagcttttacccaggagaaggctaagaaaatatgt
acggagataaatgccaagaaccagtgtcgctctgtaaggtcaaggaaacaaaaggtggtc
tctatgcccaacatactcgatgaggtatcggaaatcaagaagcaagcaaataagaatact
acaactgagtcgtcccatgtaactgtccctacagatgataacaggaaagtctctaacgtc
aagaatgtatccacaaaacttgctagcgaagccaagtcatctgatcgagaattgaaattc
aacaaaagggtcagagtttcctctggtgatgactcaaaggataaggaggtatcagagatc
aagaagcaagcaaataagaatgctccaactgagttgccccttagaaatctccctacaaat
gttagcagggaactatcaggagtcagaaaatgtgctagagaagccaagtcatgtgatcga
aaaactaccaaaaagttgagagtttcctttgatgacaattcaaaagatgaggctgttatt
gagattcgagagggtcaacataatgttaatgaaaatggtaaccaaccctctgagaagagc
aaaggcaattccaatgctagaatttttactgaccgatcatcaatgcagaagcttcctaca
ttgaagaatgatgtggttttgaggagatgtgatgccgttactagtaacattcaatgtgcc
ttttgtctttcatcagaagaatcagaggcatcaggagaaatggttcactattataatggc
aagcctgttgctgcagatcacaatggagggtccaaggttatacattcacacaggaactgc
actgaatgggctcccaacgtatattttgaagatgatattgctatgaatcttgaagctgag
ctaactagaagtcgtagaattaaatgttgttgctgtggaattaaaggagcatctcttggg
tgttatgagaagagttgtcgtaagagctttcatgttagctgtgcaaagatgactcctgaa
tgtcgatgggattctgataattttgttatgttatgccccattcatgcctcttctaagttg
ccaaatgaaagttctgaatctgaagcaaggaggaagaagagcaaccctagaaaacaacct
ggtgctgatcataataaagttgctgttaaacaagacagcaatatctgtcaggatctgaaa
ttttgtggatcatccaagaaattggttctctgttgttcaactctcacaaatgcagagcag
gaatatgttgcagaatttgaaaaattatctggagttacagtcttaaagaagtgggactct
agtatcacacatattgttgcgccaatagatgaaaatggagcatgcagaagaacccttaaa
gtattgttgggaatcttggaggggaagtggatactgagcatgggatggattaaagcttgc
atggaagccatgaaactagtgaatgaggagccttatgaaattagcgttgacatttatgga
atcagggatggccctcgacttggtagactaagactgcagaacaaggaaccaaagcttttt
gatgggcttaagttttacttcatgggagattttgtaccttcatacaagggctatctacaa
gaccttgtaatagctgctggaggaactgttttgcacagaaagcctgttccagagagccag
aaagggtcgtctggaagtcccctcgaatgtcgaaccttcattatctttagtcttgagcta
cctgatcaatgtcatcctagcaagaagggtaccattttcaaccaaaggcaggcggatgca
aagtctttggcaagttctgctgaagccaatgtagtaagcaattcatggattttgaactct
gttgcagcctgcaagttacaaaatctctcttaa
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integrated database retrieval system
