Rosa chinensis (China rose): 112203163
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Entry
112203163 CDS
T06020
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Module
rcn_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112203163
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112203163
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
PITH
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112203163
NCBI-ProteinID:
XP_024199938
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Position
1:complement(19477663..19480154)
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AA seq
475 aa
AA seq
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MEGRILATMFLFMIIMVASPSPSSCARLNGFPTTYTLRDDGAIGYYGDQVAAATSNSFHD
KEYGDVFATPNTFKEYYRPLANRQTDDDLQAFPDAWRSLAKSEFNVMNYGAVGNGQVDDT
QAFLKAWGDVCGSTQGLPALIIPKGNTFLLNSVEFKGPCKAASVNFQLSGNIVAPNNINA
WKDKEKWIQFYDVEGLIINGGGQIDGQGEVWWKVCDNSNCQRPTSVLHIYQCDGLRLSDI
THINSPRNHIFIMGSNGVQISDILIRAPDESPNTDGIKISRSTNINIHNSFIGTGDDCIA
IISGSSHINITNVMCGPGHGISVGSLGKEGAYNTVEDVQVRNCTLKGTDNGARIKTWQGG
SGYARNISFEDIIIQEVKNPIIIDQKYIDKSIAGTGTLLGQGSAVKVSDVTFRNIRGSVA
GETAITLDCDDQIGCKNIVMDNIDLTSSVPGKKVSAQCKNVQGFSTSLSPSVPCL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcgaatacttgctacgatgtttttgttcatgatcattatggttgcttcacct
tcaccaagttcatgtgccagacttaatggttttcccacaacatatactttaagagatgat
ggtgccattggttattatggtgatcaagttgctgctgcgacatcaaattcatttcatgat
aaggagtatggtgatgtttttgcaaccccaaatacattcaaagagtattatcgtcctctt
gcaaatcgccaaaccgatgatgatttacaagcattcccagatgcatggagatcacttgca
aaaagcgaattcaatgtgatgaattatggcgctgttgggaatggccaagttgatgataca
caagcctttctaaaagcatggggagatgtttgtggatccactcaaggcctccctgcactt
attataccaaagggcaacactttcttgctcaattctgtggagtttaaaggaccttgcaag
gctgcaagtgtaaatttccagctaagtgggaacattgttgcaccaaataatataaatgct
tggaaagacaaggagaaatggattcagttttatgatgttgaagggctgataatcaatgga
ggaggtcaaattgatggtcaaggtgaggtttggtggaaagtttgcgacaattcaaattgc
caacgaccaacatctgttctccatatttaccagtgtgatggtctccgcttgagtgatatt
acacatattaatagtccgagaaaccatatattcatcatgggcagcaatggcgttcaaatt
tcagatatccttattagggctcctgatgaaagtccaaacactgatggaattaaaatctct
agatcaaccaacattaacattcacaattcttttataggcactggtgacgactgtattgca
atcatttctggttcatctcatatcaacattactaatgttatgtgtggtccaggccatggt
ataagtgttggaagtcttggtaaggaaggtgcttataacacagtggaagatgtgcaagtg
agaaactgcaccctgaagggaacagataatggagcaagaatcaagacatggcaaggcggg
tcagggtatgctaggaacatcagttttgaggatatcataattcaagaagtcaagaacccc
atcattatagaccagaagtatattgataagagcattgctggaactggaaccttgcttggc
caaggaagtgctgtaaaagtgagcgatgtgacattccgtaacattcgaggatctgttgct
ggggaaacagccattactttggactgtgacgatcaaattggttgcaaaaacattgtaatg
gataacatagacttgacttcatctgttcctggcaagaaggtttctgcccagtgcaagaac
gttcaaggattttctacttcattatctcctagtgtgccatgcctttaa
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